Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a12
(862 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.49
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.64
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 29 0.85
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 29 1.1
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 28 1.5
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 28 2.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.4
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 4.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 4.5
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 27 4.5
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 27 4.5
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 6.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 6.0
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 7.9
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 7.9
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.9
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 26 7.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 7.9
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 7.9
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 26 7.9
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.49
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = -2
Query: 585 AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 406
AF H F ++ + N +E N + P+L T+ L +D P ++++ +
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437
Query: 405 FDTEALVNF 379
+T ++NF
Sbjct: 1438 ENTPLILNF 1446
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 29.5 bits (63), Expect = 0.64
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Frame = +2
Query: 371 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 544
S S +++SV + I + GLS ++ + + + +G+P +S VSVT N ++
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236
Query: 545 KLVTSGW---NLLCIKANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSI 682
+ T+GW N C+ V N T A + VS L N + S + ++ S
Sbjct: 237 TVNTNGWTSSNFKCVDDVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASY 296
Query: 683 AMY 691
+Y
Sbjct: 297 GVY 299
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.85
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -2
Query: 354 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 235
IAK G+SKRK+ + YE++K P DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 17 EFEFILSKSSMVNLNLLNSKLDVFVLIVDRNLL 115
E + +L +N +LNS+ DV + ++D+NLL
Sbjct: 40 EAKLLLPNGMSLNETVLNSESDVVIYVLDQNLL 72
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 642 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 499
IFR + R V AFI N++ PLV T++TN V +TN S
Sbjct: 93 IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 393 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 247
+L NF++DNC ++ + S R N S+ S D+DL +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 3.4
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = -2
Query: 207 IVEHAYLHYYIFKNYGVFEYCKSLTDHSLFTNKLRSTMST---KTSNLLLSKFKFTIEDF 37
I+ H++L + + Y +F CK T ++ L + + + S +L + +F+ +
Sbjct: 259 IIRHSFLLTAVRQTYNIFLLCKDSTTQAIAQVALLQMVDSVFQRLSTVLNHEREFSTINM 318
Query: 36 DKINSNSVTSR 4
+K +SN R
Sbjct: 319 NKSSSNGTPDR 329
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 4.5
Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Frame = -2
Query: 798 SDEKIQKTYELAEFDLKNLSSLESYETL-----KIKLALSKYMAMLSTLEMTQPLLEIFR 634
++ I+ + L L++L+ L+S L + L +++ S + + +LEI
Sbjct: 239 NENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVD-ILEILT 297
Query: 633 NKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENE 463
D + ++VFST R++ LV ++ + E D IL N+
Sbjct: 298 VHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRND 354
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 4.5
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Frame = +2
Query: 371 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 544
S S + +S S+S S+ S+ H+S+ S S + S P S ++ ++S +
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251
Query: 545 KL-VTSGWNLLCIKANVLNTTAAICRVSALFLNIS--NSGWVISRVLS-IAMYLLSANLI 712
+ VT + + V ++TAA+ ++ N + N+G ++ V+ +A ++ A I
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALCI 311
Query: 713 F 715
F
Sbjct: 312 F 312
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 26.6 bits (56), Expect = 4.5
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = +2
Query: 662 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 841
+ R+LSIA +LLS + + R+ + + N+ S V + T SV V+ L +
Sbjct: 14 LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69
Query: 842 RFIF 853
R+ +
Sbjct: 70 RYYY 73
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 493 GNACVISFSDHKLHFVSKISNK 558
G+AC +S + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 276 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 175
YD D+S FS+ + A + + L L E Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 192 YLHYYIFKNYGVFEYCKSLTDHSLFTN 112
+L Y+ K YG+ YC L ++SL N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.9
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = -2
Query: 411 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 250
R+ TE + N V++AK +F K+KNTT S ES+ D D S
Sbjct: 6 RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64
Query: 249 ITEVE 235
+ E E
Sbjct: 65 LNESE 69
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 490 SGNACVISFSDHKLHFVSKISNKW 561
SGN +S D+K++ + NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 347 LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 463
L I+ QLSFS+ S + SRL +T+ + TP
Sbjct: 889 LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = -2
Query: 342 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 163
F S +NTT +DD+ ++ D + E + L+ +V H + ++ Y
Sbjct: 795 FKPSNHENTTSNDDHAMDEDLDDSPEEETLKDEEEIGIRLAHLIFLVGHVAIKQLVYIEY 854
Query: 162 GVFEYCKSLTD 130
E+ + D
Sbjct: 855 CEAEFKRRKAD 865
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.8 bits (54), Expect = 7.9
Identities = 18/90 (20%), Positives = 36/90 (40%)
Frame = -2
Query: 342 FGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYIFKNY 163
FG K +D + + + D++ + ++ + + L L+ +LH +I
Sbjct: 349 FGHIDEKTIRSTDPFANRENLDFN-SIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPR 407
Query: 162 GVFEYCKSLTDHSLFTNKLRSTMSTKTSNL 73
GV + T +L L + STK +
Sbjct: 408 GVLFHGPPGTGKTLMARVLAANCSTKNQKI 437
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 529 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 693
L +++ +S+ KW+E + K C K+ N S K F + +G+ A + +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +2
Query: 512 VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 640
+S+ TNS L VKL ++ + C+ + + ++ ++ ++ L L+
Sbjct: 905 ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,831
Number of Sequences: 5004
Number of extensions: 69556
Number of successful extensions: 256
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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