Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a11
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...   109   4e-25
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   6.3  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.3  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score =  109 bits (263), Expect = 4e-25
 Identities = 51/92 (55%), Positives = 66/92 (71%), Gaps = 3/92 (3%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEF--- 720
           FNIASYSLLTHMIAH+ GY A EF+H  GD H+Y +H+E L+ QL+R PK FP L F   
Sbjct: 534 FNIASYSLLTHMIAHMCGYEAAEFVHVMGDCHIYNDHLEALQTQLERVPKAFPKLFFKRD 593

Query: 719 ARKIESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           A+ I SID F  +DF ++ Y P+  I+M+M+V
Sbjct: 594 AKDIGSIDSFSVDDFAVEGYNPYGPIKMKMSV 625


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -2

Query: 134  YKYFIKNKKHCMCNSIE*KATK*ILKL*HTILANLSTYLIKIQK 3
            Y Y    +K C  N +  KA + +  L   I+  L  Y+++++K
Sbjct: 980  YDYASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEK 1023


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 521 HLIMNENYTNIYSKSKMGTL*YSIHN 598
           H++M+++ T+IY+ S  G   YS+H+
Sbjct: 274 HILMSKDSTSIYTISLEGLSIYSLHD 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,213
Number of Sequences: 5004
Number of extensions: 67497
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)