Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a11
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0332 + 16465360-16465769,16465873-16466272,16466379-164664...   103   2e-22
12_02_0191 + 15178717-15179045,15179147-15179546,15179624-151796...    96   4e-20
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    32   0.70 
07_03_0033 + 12656255-12656297,12657402-12657408,12657484-126580...    29   5.0  

>11_04_0332 +
           16465360-16465769,16465873-16466272,16466379-16466423,
           16467113-16467139,16467201-16467266,16467889-16467950,
           16468049-16468123,16468218-16468383,16468611-16468734,
           16469737-16469843,16469992-16470102
          Length = 530

 Score =  103 bits (247), Expect = 2e-22
 Identities = 48/89 (53%), Positives = 59/89 (66%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASYSLLT+MIAHV G   GEF+H  GD HVY  H+  L+ Q+Q+ PK FP L+    
Sbjct: 442 FNIASYSLLTYMIAHVCGLSPGEFVHVIGDAHVYRTHVRALEEQIQKLPKPFPVLKINPL 501

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
            + ID F   DF +  Y PH KIEM+MA+
Sbjct: 502 KKDIDSFVASDFKLVGYDPHQKIEMKMAI 530


>12_02_0191 +
           15178717-15179045,15179147-15179546,15179624-15179668,
           15180506-15180571,15181829-15181890,15182161-15182326,
           15183384-15183507,15184177-15184283,15184395-15184505
          Length = 469

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 46/89 (51%), Positives = 58/89 (65%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASYSLLT MIA V     G+F+H  GD HVY  H+E L+ Q++++PK FP L+    
Sbjct: 381 FNIASYSLLTCMIAQVCDLSPGDFVHVIGDAHVYRTHVEALEEQMRKQPKPFPILKINPV 440

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
            + ID F   DF +  Y PH KIEM+MAV
Sbjct: 441 KKDIDSFVTSDFKLVRYDPHHKIEMKMAV 469


>01_05_0117 -
           18300157-18301106,18301149-18301543,18302592-18302681,
           18303723-18303836,18303903-18304046,18316147-18316312,
           18316396-18317130,18317219-18317422,18317496-18318177,
           18318272-18318528,18318604-18319298,18319345-18319382,
           18319847-18319928,18320018-18320112,18320443-18320526,
           18320601-18320891,18321521-18321853,18321948-18322150,
           18322243-18322399,18322482-18322585,18322675-18322835,
           18323511-18323824,18324317-18324589,18324666-18324967,
           18325459-18325549,18326140-18326190,18326700-18326768,
           18326926-18327017,18327082-18327148,18328582-18328746,
           18329027-18329103,18329572-18329766,18330208-18330275,
           18331081-18331172,18331399-18331522,18331608-18331705,
           18332384-18332997,18333620-18333626
          Length = 2892

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 703 PLMISNMRTSLLKITN--HILKLKWKWQYSILGSTIEIVNAILQC 575
           P + ++M  +LL + N  H+L + WK +Y+IL  T  I+     C
Sbjct: 270 PTVFTSMGNTLLALANAMHVLPITWKTKYTILHETNAIIKPCRFC 314


>07_03_0033 +
           12656255-12656297,12657402-12657408,12657484-12658016,
           12658106-12658224,12658329-12658688,12659602-12659784
          Length = 414

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 13  LIR*VLKLASIVCYNFKIYLVAFYSIELHMQCFLFLMKYLYSQ*NPFIQNKKLS 174
           L+R  L+L   V      Y+      ELH+  +     Y YS  N FI ++K+S
Sbjct: 88  LLRNELELCIPVINAIDFYMDGKLDSELHLMAYYLNPYYFYSNRNGFISSEKIS 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,173,893
Number of Sequences: 37544
Number of extensions: 317173
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)