Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a11
         (891 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X02308-1|CAA26178.1|  313|Homo sapiens protein ( Human mRNA for ...   144   5e-34
D00596-1|BAA00472.1|  313|Homo sapiens thymidylate synthase prot...   144   5e-34
BT006811-1|AAP35457.1|  313|Homo sapiens thymidylate synthetase ...   144   5e-34
BC083512-1|AAH83512.1|  313|Homo sapiens TYMS protein protein.        144   5e-34
BC013919-1|AAH13919.1|  313|Homo sapiens thymidylate synthetase ...   144   5e-34
BC002567-1|AAH02567.1|  313|Homo sapiens thymidylate synthetase ...   144   5e-34
AB077208-1|BAB83677.1|  279|Homo sapiens thymidylate synthase pr...   144   5e-34
AB077207-1|BAB83676.1|  230|Homo sapiens thymidylate synthase pr...   144   5e-34
AB062290-1|BAB93473.1|  313|Homo sapiens thymidylate synthetase ...   144   5e-34
AK223372-1|BAD97092.1|  313|Homo sapiens thymidylate synthetase ...   142   2e-33

>X02308-1|CAA26178.1|  313|Homo sapiens protein ( Human mRNA for
           thymidylate synthase (EC 2.1.1.45). ).
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>D00596-1|BAA00472.1|  313|Homo sapiens thymidylate synthase
           protein.
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>BT006811-1|AAP35457.1|  313|Homo sapiens thymidylate synthetase
           protein.
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>BC083512-1|AAH83512.1|  313|Homo sapiens TYMS protein protein.
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>BC013919-1|AAH13919.1|  313|Homo sapiens thymidylate synthetase
           protein.
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>BC002567-1|AAH02567.1|  313|Homo sapiens thymidylate synthetase
           protein.
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>AB077208-1|BAB83677.1|  279|Homo sapiens thymidylate synthase
           protein.
          Length = 279

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 191 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 250

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 251 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 279


>AB077207-1|BAB83676.1|  230|Homo sapiens thymidylate synthase
           protein.
          Length = 230

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 142 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 201

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 202 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 230


>AB062290-1|BAB93473.1|  313|Homo sapiens thymidylate synthetase
           protein.
          Length = 313

 Score =  144 bits (348), Expect = 5e-34
 Identities = 64/89 (71%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


>AK223372-1|BAD97092.1|  313|Homo sapiens thymidylate synthetase
           variant protein.
          Length = 313

 Score =  142 bits (343), Expect = 2e-33
 Identities = 63/89 (70%), Positives = 73/89 (82%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           F+IASY+LLT+MIAH+TG   G+FIHT GD H+YLNHIEPLKIQLQREP+ FP L   RK
Sbjct: 225 FDIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQREPRPFPKLRILRK 284

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           +E IDDFK EDF I+ Y PHP I+MEMAV
Sbjct: 285 VEKIDDFKAEDFQIEGYNPHPTIKMEMAV 313


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,908,309
Number of Sequences: 237096
Number of extensions: 2008772
Number of successful extensions: 2828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2828
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)