Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a11
         (891 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089595-1|AAL90333.1|  321|Drosophila melanogaster RE18955p pro...   140   2e-33
AF073994-3|AAC27622.1|  321|Drosophila melanogaster thymidylate ...   140   2e-33
AE014134-521|AAF51176.1|  321|Drosophila melanogaster CG3181-PA ...   140   2e-33

>AY089595-1|AAL90333.1|  321|Drosophila melanogaster RE18955p
           protein.
          Length = 321

 Score =  140 bits (340), Expect = 2e-33
 Identities = 60/89 (67%), Positives = 74/89 (83%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLTHMIAHVTG   G+F+HT GDTHVYLNH+EPLK QL+R P+ FP L   R+
Sbjct: 233 FNIASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQ 292

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           ++ I+DF++EDF I DY PHPKI+M+MAV
Sbjct: 293 VQDIEDFRFEDFQIVDYNPHPKIQMDMAV 321


>AF073994-3|AAC27622.1|  321|Drosophila melanogaster thymidylate
           synthase protein.
          Length = 321

 Score =  140 bits (340), Expect = 2e-33
 Identities = 60/89 (67%), Positives = 74/89 (83%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLTHMIAHVTG   G+F+HT GDTHVYLNH+EPLK QL+R P+ FP L   R+
Sbjct: 233 FNIASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQ 292

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           ++ I+DF++EDF I DY PHPKI+M+MAV
Sbjct: 293 VQDIEDFRFEDFQIVDYNPHPKIQMDMAV 321


>AE014134-521|AAF51176.1|  321|Drosophila melanogaster CG3181-PA
           protein.
          Length = 321

 Score =  140 bits (340), Expect = 2e-33
 Identities = 60/89 (67%), Positives = 74/89 (83%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FNIASY+LLTHMIAHVTG   G+F+HT GDTHVYLNH+EPLK QL+R P+ FP L   R+
Sbjct: 233 FNIASYALLTHMIAHVTGLKPGDFVHTMGDTHVYLNHVEPLKEQLERTPRPFPKLIIKRQ 292

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           ++ I+DF++EDF I DY PHPKI+M+MAV
Sbjct: 293 VQDIEDFRFEDFQIVDYNPHPKIQMDMAV 321


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,854,482
Number of Sequences: 53049
Number of extensions: 620193
Number of successful extensions: 1175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)