Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a11
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate s...   114   7e-26
AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical...   114   7e-26
Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.5  
U50068-7|AAB37735.1|  479|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>AF099673-1|AAC97508.1|  315|Caenorhabditis elegans thymidylate
           synthase protein.
          Length = 315

 Score =  114 bits (275), Expect = 7e-26
 Identities = 52/89 (58%), Positives = 61/89 (68%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FN+ASY LLTHMIA V G   G  +HT GD HVY NH++ LKIQL REP  FP + F R 
Sbjct: 227 FNLASYGLLTHMIAKVCGLKPGTLVHTLGDAHVYSNHVDALKIQLDREPYAFPKIRFTRD 286

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           + SIDDF  +   + DYK HPKI M+MAV
Sbjct: 287 VASIDDFTSDMIALDDYKCHPKIPMDMAV 315


>AC006708-20|AAF60422.1|  312|Caenorhabditis elegans Hypothetical
           protein Y110A7A.4 protein.
          Length = 312

 Score =  114 bits (275), Expect = 7e-26
 Identities = 52/89 (58%), Positives = 61/89 (68%)
 Frame = -2

Query: 890 FNIASYSLLTHMIAHVTGYXAGEFIHTPGDTHVYLNHIEPLKIQLQREPKQFPTLEFARK 711
           FN+ASY LLTHMIA V G   G  +HT GD HVY NH++ LKIQL REP  FP + F R 
Sbjct: 224 FNLASYGLLTHMIAKVCGLKPGTLVHTLGDAHVYSNHVDALKIQLDREPYAFPKIRFTRD 283

Query: 710 IESIDDFKYEDFIIKDYKPHPKIEMEMAV 624
           + SIDDF  +   + DYK HPKI M+MAV
Sbjct: 284 VASIDDFTSDMIALDDYKCHPKIPMDMAV 312


>Z72508-1|CAA96641.1|  342|Caenorhabditis elegans Hypothetical
           protein F28H7.1 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 585 IAFTISIVEPSILYCHFHFNFRMWFVIFNNEVL 683
           IAF  S++  +    H HF +R +FV+FNN+ L
Sbjct: 92  IAFRCSLISGAYAVLHSHFLYR-FFVLFNNQFL 123


>U50068-7|AAB37735.1|  479|Caenorhabditis elegans Hypothetical
           protein C01G5.3 protein.
          Length = 479

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 818 IHTPGDTHVYLNHIEPLKIQLQREPKQF-PTLEFARKIESI 699
           +HT  +T + LN I+PL   ++R+   F P L F+  I S+
Sbjct: 258 LHTIKNTKLVLNEIQPLSEMMKRDDIHFTPELVFSNTIRSL 298


>Z83111-6|CAB05529.2|  316|Caenorhabditis elegans Hypothetical
           protein F57G8.8 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 579 CSIAFTISIVEPSILYCHFHF-NFRMWFVIFNNE 677
           C    +I++  P++L CH HF N + +FVI + E
Sbjct: 119 CHWLISIALHMPAVLICHAHFENAQSFFVITSEE 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,971,124
Number of Sequences: 27780
Number of extensions: 362488
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)