Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a10
(853 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 2.7
DQ435335-1|ABD92650.1| 135|Apis mellifera OBP18 protein. 23 3.6
DQ435332-1|ABD92647.1| 135|Apis mellifera OBP15 protein. 22 6.2
AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein. 22 6.2
X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein. 22 8.2
EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2 prot... 22 8.2
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 8.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 8.2
AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2 prot... 22 8.2
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 22 8.2
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 22 8.2
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 23.4 bits (48), Expect = 2.7
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 437 LLMPCTNPPAHTSNCYNNSIYKEGRWVANTDSSQCIDFSNYKEL 306
++ +N H +N YNN+ Y N ++ +++NYK+L
Sbjct: 314 IISSLSNKTIHNNNNYNNNNYNN-----NYNNYNNNNYNNYKKL 352
>DQ435335-1|ABD92650.1| 135|Apis mellifera OBP18 protein.
Length = 135
Score = 23.0 bits (47), Expect = 3.6
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = +1
Query: 763 VFLERSYISLSIKQCSRVTDSGLFLSS 843
+FL+ + ++ I +CS ++D+ L + S
Sbjct: 90 IFLDENGVNKLITECSAISDADLAVKS 116
>DQ435332-1|ABD92647.1| 135|Apis mellifera OBP15 protein.
Length = 135
Score = 22.2 bits (45), Expect = 6.2
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 763 VFLERSYISLSIKQCSRVTDSGLFL 837
+FL + I+ I +CS ++D+ + L
Sbjct: 90 IFLNENEINQLITECSAISDTNVHL 114
>AY921579-1|AAX14899.1| 996|Apis mellifera ephrin receptor protein.
Length = 996
Score = 22.2 bits (45), Expect = 6.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -3
Query: 431 MPCTNPPAHTSNCYNNSI 378
MPCT PP+ N N +
Sbjct: 312 MPCTQPPSAPQNLTVNFV 329
>X16709-1|CAA34681.1| 162|Apis mellifera phospholipase A-2 protein.
Length = 162
Score = 21.8 bits (44), Expect = 8.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 845 KDDKNNPESVTREHCLIDNDIYDLSKNT 762
K N S TR C D+ YD KN+
Sbjct: 75 KHGLTNTASHTRLSCDCDDKFYDCLKNS 102
>EF373554-1|ABQ28728.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.8 bits (44), Expect = 8.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 845 KDDKNNPESVTREHCLIDNDIYDLSKNT 762
K N S TR C D+ YD KN+
Sbjct: 80 KHGLTNTASHTRLSCDCDDKFYDCLKNS 107
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = +2
Query: 386 CCSNYWCVPADWCTASAKTCRPTKMLKKQNCS*DC 490
CC W T ++ C + K++N S C
Sbjct: 344 CCKTRIIGRRSWVTRESQICNNSSSDKERNSSFKC 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 795 DQTVFACHRFGVIFVIFN 848
+ V +C FGV+FV+F+
Sbjct: 10 ESDVSSCVIFGVLFVLFS 27
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 8.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 795 DQTVFACHRFGVIFVIFN 848
+ V +C FGV+FV+F+
Sbjct: 10 ESDVSSCVIFGVLFVLFS 27
>AF438408-1|AAL30844.1| 167|Apis mellifera phospholipase A2
protein.
Length = 167
Score = 21.8 bits (44), Expect = 8.2
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -3
Query: 845 KDDKNNPESVTREHCLIDNDIYDLSKNT 762
K N S TR C D+ YD KN+
Sbjct: 80 KHGLTNTASHTRLSCDCDDKFYDCLKNS 107
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 224 WSFIAQQKSNLITTMENTKFGGVGTSLND 138
WS+++ +K+N + T+ G T LN+
Sbjct: 286 WSYMSGEKANEVATILVDDCGCNSTMLNE 314
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.8 bits (44), Expect = 8.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 224 WSFIAQQKSNLITTMENTKFGGVGTSLND 138
WS+++ +K+N + T+ G T LN+
Sbjct: 286 WSYMSGEKANEVATILVDDCGCNSTMLNE 314
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,583
Number of Sequences: 438
Number of extensions: 5140
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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