Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a08
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe...    29   1.1  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    27   2.6  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    27   2.6  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   5.9  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    26   7.8  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    26   7.8  

>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 559 ILSTPQSEPTKNMSPYDLTVTISRSGPSGNLKHRANI 669
           + S P  + +K  S   +  TI   GP GN KHR  +
Sbjct: 129 VKSYPNGKVSKKFSELKIGDTIGVRGPKGNWKHRTGL 165


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 674 QWMFALCFKLPE-GPLRDIVTVRS 606
           QW+F  C+KLPE     DI T+RS
Sbjct: 174 QWIFCFCYKLPELLNGEDISTLRS 197


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 674 QWMFALCFKLPE-GPLRDIVTVRS 606
           QW+F  C+KLPE     DI T+RS
Sbjct: 174 QWIFCFCYKLPELLNGEDISTLRS 197


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 565 STPQSEPTKN-MSPYDLTVTISRSGPSGNLKHRANIH*MYTLQSKWSNRLYLLNSCNKLL 741
           STP   P  + +SP  +  T    GPS N +   N+  + T  +  S  L ++   N+L+
Sbjct: 439 STPDKRPVPSEVSPIAIFTTRMERGPSKNYEKPINLRFISTPGTNNSRYLVIVYVMNQLI 498

Query: 742 S 744
           +
Sbjct: 499 T 499


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 746 EESNLLHEFNKYNLFDHFDWRVY-IQWMFALCFKL 645
           E+ N+  E     +F H DWR + ++++   CF L
Sbjct: 27  EDYNMNPELENPGMFKHVDWRDFRLEFVILACFFL 61


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 165 ELVSVIQAPLRIFFYYQISSLH*FSDKKTCTKNYMAPTSSSIFKKLNSLKI 317
           EL++ + + L +FF  Q+++LH    K     +   P S + FK+ +S+KI
Sbjct: 355 ELIASVDSHLYVFFQAQLNALHKELIKSFFDASNEFP-SDTPFKESSSIKI 404


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -3

Query: 449 IIEIEVMEIVDGHIIMVAMPKKVAVLTFSHCFKRAASIAMFSNSNLQRVKFFED 288
           I E    ++ D  I +  + K +  ++  HC     +IA  ++SN+QRV +  +
Sbjct: 134 IYETNTKDVKDRLIGITGLRKILEHVSKMHCQLGTVAIAGLNSSNIQRVIYLSE 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,502,044
Number of Sequences: 5004
Number of extensions: 76270
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)