Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a08
         (853 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    30   2.0  
10_02_0110 - 5371536-5372882                                           30   2.7  
04_03_0442 - 15967204-15967501,15967954-15968126,15968581-159687...    30   2.7  
01_01_0430 + 3258438-3259200,3259929-3261454                           30   2.7  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    28   8.2  

>07_03_1575 - 27848977-27849095,27849254-27849302,27850270-27850287,
            27850798-27851786,27852119-27852733,27852893-27852921,
            27853990-27854453,27854530-27854654,27854743-27855025,
            27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 288  IFKKLNSLKIGIGKHCYRGSPLETVTKCEYCHFLGHRYHDYMP 416
            + +K     +G+  HC +   +     C+YC  L H+ H  +P
Sbjct: 1125 LLEKAKKQVLGLCGHCDKEVKISDAVNCQYCEALFHKKHFKVP 1167


>10_02_0110 - 5371536-5372882
          Length = 448

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -2

Query: 678 HSMDVCPMFQIAGRSTTRYSDGEV---IWRHIFCRLRLGCTKNISFAVHKWRVRLHE 517
           H + + P  +++   T+RY DG        H+      GCT+    +V  WRVRLHE
Sbjct: 316 HLLGISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHE 371


>04_03_0442 -
           15967204-15967501,15967954-15968126,15968581-15968716,
           15969064-15969288,15969792-15970053,15970062-15970169,
           15970337-15970595,15971188-15971199
          Length = 490

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = +3

Query: 171 VSVIQAPLRIFFYYQISSLH*FSDKKTCTKNYMAPTSSSIFKKLNSLKIGIGKHCYR 341
           VS++   LR F+   +S+   F D+    K Y+   + + F+KL+S  +   +  +R
Sbjct: 295 VSLVPEYLRKFYEIMLSTFREFEDQMLSNKRYLVAFNKAEFQKLSSYYLEAAEWSHR 351


>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -3

Query: 833 TGKNLNIITLERNIYTLIGHELQLQCTITEESNLLHEFNKYNLFD 699
           T K L  + L  N +T IGH+  L C  T   NL      YN+F+
Sbjct: 309 TWKELFFLDLSNNKFTSIGHDSLLPCLYTRYINL-----SYNMFE 348


>11_06_0561 - 24984960-24985205,24985283-24985354,24985906-24985977,
            24986612-24986782,24987464-24987653,24987733-24987976,
            24988162-24988474,24988687-24989517,24989628-24989672,
            24989677-24989790,24989877-24990371,24990627-24990824,
            24990902-24991357
          Length = 1148

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 848  HCLGHTGKNLNIITLERNIYTLIGHELQLQCTITEESNLL 729
            +CL   G+  N+I  E     LIG+   L C  T  SN+L
Sbjct: 900  YCLWIIGEGKNLIASEDLWKKLIGYAKNLHCVATLNSNVL 939


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,936,532
Number of Sequences: 37544
Number of extensions: 431154
Number of successful extensions: 878
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)