Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a08
         (853 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    27   0.72 
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   2.9  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   3.9  
DQ518577-1|ABF66619.1|  318|Anopheles gambiae putative secreted ...    23   8.9  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   8.9  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 27.1 bits (57), Expect = 0.72
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 392 PKKVAVLTFSHCFKRAASIAMFSNSNLQRVKFFED*G 282
           P K +V++FSH     +     SNS+L RV    D G
Sbjct: 741 PDKCSVISFSHSLSPISFNYTLSNSSLSRVLSIRDLG 777


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = -1

Query: 190 GAWMTETNSMQKHILRCRYRENFQSNLVFKHII*SLIEYN 71
           G W+ + N   + + +  Y+++    +V+ + + S++EY+
Sbjct: 643 GNWLKQINQEDRPLFKFDYKDDRMWKIVYPNRLESMLEYS 682


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 324  GKHCYRGSPLETVTKC 371
            GK CY   P+++VT C
Sbjct: 1610 GKECYLPCPVQSVTNC 1625


>DQ518577-1|ABF66619.1|  318|Anopheles gambiae putative secreted
           carbonic anhydrase protein.
          Length = 318

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 544 NGE*YILSTPQSEPTKNMSPYDL 612
           NG    LS P+++PT    PY L
Sbjct: 93  NGHSVSLSIPKTDPTSGKHPYIL 115


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.4 bits (48), Expect = 8.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 408  YMPVDYLHYFDFNYW 452
            Y   DY  YF F YW
Sbjct: 1568 YQFFDYARYFTFPYW 1582


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 873,123
Number of Sequences: 2352
Number of extensions: 17747
Number of successful extensions: 242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 90545769
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)