Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a08
         (853 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC041475-1|AAH41475.1|  362|Homo sapiens abhydrolase domain cont...    31   5.3  
AK074822-1|BAC11230.1|  362|Homo sapiens protein ( Homo sapiens ...    31   5.3  
U92705-1|AAB58788.1|  115|Homo sapiens rearranged immunoglobulin...    31   7.0  

>BC041475-1|AAH41475.1|  362|Homo sapiens abhydrolase domain
           containing 7 protein.
          Length = 362

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 767 QLQCTITEESNLLHE--FNKYNLFDHFDWRVYIQWMFALCFKLPEGPLRDIVTVRSYGDI 594
           +L C IT+  ++L    ++K  L  H DW   I W+ A+C+  PE  ++ IV    + ++
Sbjct: 143 KLDCLITDIKDILDSLGYSKCVLIGH-DWGGMIAWLIAICY--PEMVMKLIVINFPHPNV 199

Query: 593 F 591
           F
Sbjct: 200 F 200


>AK074822-1|BAC11230.1|  362|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90341 fis, clone NT2RP2002674, weakly similar to
           SOLUBLE EPOXIDE HYDROLASE. ).
          Length = 362

 Score = 31.1 bits (67), Expect = 5.3
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 767 QLQCTITEESNLLHE--FNKYNLFDHFDWRVYIQWMFALCFKLPEGPLRDIVTVRSYGDI 594
           +L C IT+  ++L    ++K  L  H DW   I W+ A+C+  PE  ++ IV    + ++
Sbjct: 143 KLDCLITDIKDILDSLGYSKCVLIGH-DWGGMIAWLIAICY--PEMVMKLIVINFPHPNV 199

Query: 593 F 591
           F
Sbjct: 200 F 200


>U92705-1|AAB58788.1|  115|Homo sapiens rearranged immunoglobulin
           heavy chain protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 7.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 348 PLETVTKCEYC-HFLGHRYHDYMPVDYLHYFDFNYW 452
           P++T T   YC H +GH++  Y    Y +YFD  YW
Sbjct: 74  PVDTATY--YCAHGMGHQFDYYYTTSYPYYFD--YW 105


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,327,816
Number of Sequences: 237096
Number of extensions: 2484030
Number of successful extensions: 11944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11944
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10816958492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)