Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a08
         (853 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical ...    31   0.79 
AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical ...    31   1.4  
Z81584-7|CAE17905.1|  202|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83103-1|CAB05474.1|  358|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical pr...    28   9.7  
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass...    28   9.7  
AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AF100659-7|AAC68967.1|  688|Caenorhabditis elegans Hypothetical
           protein F58E2.4 protein.
          Length = 688

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = -3

Query: 821 LNIITLERNIYTL-IGHELQLQCTITEESNLLHEFNKYNLFDHFDWRVYIQWMFALCFKL 645
           L+ +  E N+ ++ +G  L+L+    + SN L +F  +      D R+Y        +K 
Sbjct: 580 LHFVVAEVNLESISMGDVLELKNVFQQNSNKLKKFKAFFENSDIDERIYDDQFLGFPYKR 639

Query: 644 PEGPLRDIVTV 612
           PE P  ++ +V
Sbjct: 640 PENPSTNLPSV 650


>AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.5 protein.
          Length = 345

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 321 IGKHCYRGSPLETVTKCEYCHFLGHRYHDYMPVDYLHYFDFNYWTHREHWAVASLHKIIL 500
           IG+HC+  SP+    KC +C F            YLH+ +      +E    +++ K+IL
Sbjct: 47  IGEHCFTKSPI--TKKCTFCRFQKCIQVGMTLPSYLHFGELT----KEKCIDSTIQKLIL 100

Query: 501 FQWH 512
            + H
Sbjct: 101 MEAH 104


>Z81584-7|CAE17905.1|  202|Caenorhabditis elegans Hypothetical
           protein T04C12.7 protein.
          Length = 202

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 551 SPFTNGELDFMNHMPLKQYNFMERSDCPVLSVCPIIEIEVMEIVDGH 411
           +P T+ E D  N  PLK +     + C +    PI  +  M+I D H
Sbjct: 96  APQTSTETDIKNATPLKMHRISRFTFCCLCMCIPIGILWTMQIYDNH 142


>Z83103-1|CAB05474.1|  358|Caenorhabditis elegans Hypothetical
           protein D1025.1 protein.
          Length = 358

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +1

Query: 565 STPQSEPTKNMSPYDLTVTISRSGPSGNLKHRANI 669
           ST     TK +   DLTV    SGPSG   HR+NI
Sbjct: 107 STKHDFSTKKIEVIDLTVD---SGPSGPDMHRSNI 138


>U97196-2|AAB52461.2|  268|Caenorhabditis elegans Hypothetical
           protein B0207.6 protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = -3

Query: 620 VTVRSYGDIFFVGSDWGVLRIYHSPFTNGELDFMNHMP-LKQYNFMERSDCPVLSVCPII 444
           V   S  D+F     + +    H P  N  LD +N +P L++Y  +  + C V+S   ++
Sbjct: 166 VNCLSKADLFSEDGTYDLEFFSHLPDVNRLLDLLNEVPGLEKYRKLNEAICGVISDFDLV 225

Query: 443 EIEVMEIVDGHIIMVAMPKKVAVLTFS 363
               + + +   +M  +    A   FS
Sbjct: 226 SFVPLAVENKESMMKVIQMVDAANGFS 252


>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 278 protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 520  MKSNSPFVNGE*YILSTPQSEPTKNMSPYDLTVTISRSGPSGNLKHR 660
            ++  SP  +    + STP S     +SP+D    + RS PS  L  R
Sbjct: 1069 LRDRSPAKSKSDNLESTPSSSSRNLLSPFDAEKRMERSSPSQQLFSR 1115


>AC006832-7|AAF39999.1|  505|Caenorhabditis elegans Hypothetical
           protein ZK355.5 protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 230 LVFRQKNLY*KLYGSNFFLNLQ 295
           L F + NL+  LYG  FF+NLQ
Sbjct: 281 LGFEKINLFWDLYGGKFFINLQ 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,982
Number of Sequences: 27780
Number of extensions: 412639
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)