Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a07
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 270 7e-73
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 245 3e-65
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 229 3e-60
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 54 2e-07
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 53 3e-07
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 52 8e-07
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 50 3e-06
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.100
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.100
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 34 0.13
07_03_1414 - 26403361-26403969 31 0.93
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 31 1.2
07_03_1422 + 26462871-26463434,26463772-26463897 30 2.1
07_03_1413 - 26396426-26396890 30 2.1
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 30 2.8
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 3.8
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 8.7
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 270 bits (663), Expect = 7e-73
Identities = 128/230 (55%), Positives = 165/230 (71%)
Frame = -3
Query: 697 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 518
LFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 517 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKK 338
A LFK+L KYRPE +P ++ G N VT L+E+
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAK-KPIVVKYGLNHVTYLIEQS 142
Query: 337 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 158
KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V++
Sbjct: 143 KAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNE 202
Query: 157 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 8
D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS A+ EK A+E
Sbjct: 203 DKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKE 252
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 245 bits (600), Expect = 3e-65
Identities = 119/230 (51%), Positives = 162/230 (70%)
Frame = -3
Query: 697 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 518
LFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 517 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKK 338
++L++ + E +P ++ G + VT L+E+
Sbjct: 85 LGCQKERLLKRAQAEAEGKTVEAK-----------------KPIVVKYGLDHVTYLIEQS 127
Query: 337 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 158
KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V++
Sbjct: 128 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNE 187
Query: 157 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 8
D+ FSK++EAIK+NFN++++E+RK WGGG++G+KS A+ EK A+E
Sbjct: 188 DKLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKSQAKTKAREKLLAKE 237
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 229 bits (559), Expect = 3e-60
Identities = 117/230 (50%), Positives = 152/230 (66%)
Frame = -3
Query: 697 LFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 518
LFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 517 TAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXKRPNTIRSGTNTVTKLVEKK 338
A LFK+L KYRPE K+P ++ G N VT L+E+
Sbjct: 68 LATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQS 126
Query: 337 KAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 158
KAQLVVIAHDVDPIELV++LPALCRKM +VH+KT + L LT V++
Sbjct: 127 KAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVKNE 172
Query: 157 DRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAKARE 8
D+ FSK++EAIK NFN++++E+RK WGGGV+G+KS A+ EK A+E
Sbjct: 173 DKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKE 222
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = -3
Query: 382 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GAL 209
++ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 208 VHRKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGG 71
R TC L LT G+ V E +KT++++ E+ + G
Sbjct: 105 TKRPTCCVLVLTKPAKGELE--EDVKEKLKTDYDQVMSEVAEAGNG 148
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 53.2 bits (122), Expect = 3e-07
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -3
Query: 382 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 209
++ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 208 VHRKTCTCLALTNVESGDRASFSKVVEAIK 119
V R C +N S R + + AI+
Sbjct: 93 VTRPVIACSVTSNEASNLRDPINNLKVAIE 122
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 51.6 bits (118), Expect = 8e-07
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -3
Query: 382 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 209
++ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 208 VHRKTCTCLALTNVESGDRASFSKVVEAIK 119
V R C +N S + + +AI+
Sbjct: 95 VTRPVIACSVTSNEGSQLKTPIQNLKDAIE 124
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 49.6 bits (113), Expect = 3e-06
Identities = 25/98 (25%), Positives = 45/98 (45%)
Frame = -3
Query: 382 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVH 203
++ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 202 RKTCTCLALTNVESGDRASFSKVVEAIKTNFNERYEEL 89
K TC L + +V E +K++++ E+
Sbjct: 105 TKRPTCCVLVMTKPAKGEINEEVKEKLKSDYDHVVAEV 142
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.100
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 373 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 215
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.100
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = -3
Query: 373 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 215
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 34.3 bits (75), Expect = 0.13
Identities = 33/119 (27%), Positives = 51/119 (42%)
Frame = +3
Query: 15 ALAFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPDSTFVRAKHVH 194
ALAF L + A LL PP + S R ++ + + R P+ + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 195 VLRCTSAPRRDLPLTMQYGTPILRHNAGRKRTSSIGSTS*AMTTSCAFFFSTNLVTVFV 371
+R T D P T++YGT +G+ S+ GST+ T S + S N+ V +
Sbjct: 68 KMRVTWITGGDAPATVEYGT-----TSGQYPFSATGSTN---TYSYVLYHSGNIHDVVI 118
>07_03_1414 - 26403361-26403969
Length = 202
Score = 31.5 bits (68), Expect = 0.93
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +2
Query: 593 ALDADILGPSYKSGQVTSWLNALTNGKVLWPLLEERIHDLLGLNLFD 733
AL A + P + G++ + + +T G+ L P LEE + GL L+D
Sbjct: 76 ALSAAVSNPGFFFGRMVVFNDPVTEGRALPPSLEETVVRAQGLYLYD 122
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 605 PHPAPEGCTSASSESAPSDQP 543
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>07_03_1422 + 26462871-26463434,26463772-26463897
Length = 229
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 593 ALDADILGPSYKSGQVTSWLNALTNGKVLWPLLEERIHDLLGLNLFD 733
AL + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 74 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 120
>07_03_1413 - 26396426-26396890
Length = 154
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 593 ALDADILGPSYKSGQVTSWLNALTNGKVLWPLLEERIHDLLGLNLFD 733
AL + P Y G+V + + +T G+ L P LEE GL L D
Sbjct: 28 ALSTAVSSPGYFFGRVVVFNDPMTEGRALPPSLEETAVRAQGLYLLD 74
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 184 LALTNVESGDRASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSNARIAKLEKAK 17
LA + E SF+ V E + R +EL WGG LGN ++K+EK K
Sbjct: 831 LASSAAEETLTGSFNPVQERRRA----REKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 21 AFSSLAMRALDLLPRTPPPQCLRSSS*RSLKFVLMASTTFEKEARSPD 164
A SS R L R+PPP LR + R + V A T E +A +P+
Sbjct: 14 AASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAPE 61
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +1
Query: 658 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 750
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,014,184
Number of Sequences: 37544
Number of extensions: 453672
Number of successful extensions: 1476
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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