Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a06
         (324 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    88   3e-19
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    39   2e-04
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   0.30 
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   2.8  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   3.7  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    24   4.9  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    24   4.9  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    23   8.6  

>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 88.2 bits (209), Expect = 3e-19
 Identities = 45/93 (48%), Positives = 64/93 (68%), Gaps = 1/93 (1%)
 Frame = -2

Query: 290 TVIVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHP 111
           +V ++S    I  LPG   +  T  T+  + E HTLGNSL+ +I K  +VEFCGY++PHP
Sbjct: 12  SVAMESATEKIIILPGHS-ADLTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHP 70

Query: 110 AESKMHFRIQ-ARETPALEVLKRGLKDLEMVCD 15
           +E+KM+FRIQ A  T A++VL++GL DL  +CD
Sbjct: 71  SEAKMNFRIQTAPSTTAVDVLRKGLDDLIDLCD 103


>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 38.7 bits (86), Expect = 2e-04
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -2

Query: 239 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARE 72
           D   P         E HTL N L   +   + V F GY VPHP       R+Q  E
Sbjct: 23  DSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVE 78


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 28.3 bits (60), Expect = 0.30
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 55  TSNAGVSLACILKCIFDSAGCGTVYPQNSTSSYLFIIHFNEFPNVWLSF 201
           T+N G+SL  ++  +F     G  Y  +     +F  HF++F  +W+ F
Sbjct: 3   TANKGLSLVLLIPNLFALVSGGLQYVFD-VRRRIFRPHFSQFWTIWMKF 50


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 260 ISELPGDDDSGPTCRTYVFRNESHTLGNSLKCII 159
           I E  G+D++G   +T  F+   H L     C I
Sbjct: 21  IDEASGNDETGNGSQTSPFKTAIHALETDANCTI 54


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 164 IINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLK 48
           ++  ++ ++  GY    P+ S +  RI ARE    E+L+
Sbjct: 84  VLRVFEAIKKAGYVSNVPSPSDVFLRIPAREATLEELLQ 122


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 122 RYIHRIQHHHICL*YILMNSLMYGFHFGRRMFC 220
           RY+  I H    L Y L+ S  YG +  + + C
Sbjct: 602 RYVDNISHFAQSLLYTLLISDRYGINTNQALLC 634


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 265 ILLLFTITVWVILF*SVP 318
           +L LF +T W ILF  VP
Sbjct: 533 LLTLFALTFWDILFEDVP 550


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 239 DDSGPTCRTYVFRNESHTLGN 177
           D   P   T   RN SHT+GN
Sbjct: 469 DKQKPLLTTQRTRNRSHTIGN 489


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,415,831
Number of Sequences: 5004
Number of extensions: 27632
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)