Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a06
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925           77   4e-15
11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112           48   2e-06
07_01_0515 - 3846405-3846449,3846804-3846899,3846980-3847058,384...    43   5e-05
12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732     29   0.84 
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960           27   4.5  
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    27   4.5  
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475...    26   7.8  

>12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925
          Length = 108

 Score = 76.6 bits (180), Expect = 4e-15
 Identities = 31/71 (43%), Positives = 48/71 (67%)
 Frame = -2

Query: 224 TCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKR 45
           T  T+    E HTL NS++ ++N+   V FCGY++PHPA++K++ R+Q    PA +VLK 
Sbjct: 10  TASTFSIVEEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGDPAKDVLKD 69

Query: 44  GLKDLEMVCDH 12
            L+DL ++C H
Sbjct: 70  SLQDLMVMCQH 80


>11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112
          Length = 118

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 29/38 (76%)
 Frame = -2

Query: 125 TVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDH 12
           ++PHPA++K++ R+Q    PA++V K GL+DL ++C H
Sbjct: 63  SIPHPADNKVNIRVQTTGDPAIDVFKDGLQDLIVMCQH 100


>07_01_0515 -
           3846405-3846449,3846804-3846899,3846980-3847058,
           3847144-3847233,3847529-3847626
          Length = 135

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = -2

Query: 215 TYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ-ARETPALEVLKRGL 39
           ++    E HT+GN L+  +++  +V F GY +PHP + K+  R+  A ++   +   + +
Sbjct: 47  SFTIEREDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYTQAI 106

Query: 38  KDLE 27
            DL+
Sbjct: 107 NDLD 110


>12_02_1163 - 26617450-26617550,26617643-26617744,26618606-26618732
          Length = 109

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 311 DQNNITQTVIVKSNRMNISELPGDDDSGPTCRTYVFRNES 192
           DQ N    V+  S R NI     D++  PT  T   RNE+
Sbjct: 25  DQENDASAVVQPSPRTNIGTEYSDENMSPTIATSEVRNET 64


>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
          Length = 127

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 230 LNRHHQEAQKCSFCYFLQSLFG*YYFD 310
           ++RH    Q+ SFC FL  L G  Y D
Sbjct: 33  MDRHSLRLQRPSFCCFLLDLVGYVYAD 59


>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
            1625603-1625887,1626016-1626030,1626339-1626419,
            1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 257  SELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVE 138
            SE P   D+G + + Y   +    LGN +  +I+ ++ +E
Sbjct: 1804 SEDPSPTDNGKSLQDYHVESNEENLGNGIGDVISVHEKIE 1843


>06_03_1282 -
           28946363-28946533,28947234-28947272,28947399-28947566,
           28947605-28947697,28948135-28948215,28948409-28948499,
           28948657-28948728,28948803-28948903,28949283-28949381,
           28949631-28949954
          Length = 412

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 74  LWLVS*NAFLILLGVERYIHRIQHHHIC 157
           LW+V   AF+  +G+  Y++  QH+  C
Sbjct: 13  LWIVILIAFVCAVGIGAYLYTPQHYTPC 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,519,129
Number of Sequences: 37544
Number of extensions: 156221
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)