Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a06
         (324 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT028781-1|ABI34162.1|  105|Drosophila melanogaster IP05502p pro...   125   1e-29
AE014134-3052|AAF53770.1|  105|Drosophila melanogaster CG10685-P...   125   1e-29
AE014134-2838|AAF53606.1|  117|Drosophila melanogaster CG6840-PA...    44   5e-05
BT001454-1|AAN71209.1|  136|Drosophila melanogaster GM15177p pro...    31   0.45 
BT011368-1|AAR96160.1|  943|Drosophila melanogaster RE64037p pro...    27   4.2  
AY058743-1|AAL13972.1|  769|Drosophila melanogaster LP08544p pro...    27   4.2  
AE013599-148|AAM68345.1|  878|Drosophila melanogaster CG7843-PB,...    27   4.2  
AE013599-147|AAM68344.1|  943|Drosophila melanogaster CG7843-PD,...    27   4.2  
AE013599-146|AAM68343.1|  943|Drosophila melanogaster CG7843-PC,...    27   4.2  
AE013599-145|AAF57281.2|  943|Drosophila melanogaster CG7843-PA,...    27   4.2  
AY119008-1|AAM50868.1|  102|Drosophila melanogaster LP03531p pro...    27   7.3  
AE014296-586|AAN11539.1|  102|Drosophila melanogaster CG32284-PA...    27   7.3  
AY113409-1|AAM29414.1|  525|Drosophila melanogaster RE13562p pro...    26   9.7  
AE014298-1174|AAF46370.2|  525|Drosophila melanogaster CG12125-P...    26   9.7  
AE014297-2988|AAN13869.1|  476|Drosophila melanogaster CG32491-P...    26   9.7  

>BT028781-1|ABI34162.1|  105|Drosophila melanogaster IP05502p
           protein.
          Length = 105

 Score =  125 bits (302), Expect = 1e-29
 Identities = 52/85 (61%), Positives = 69/85 (81%)
 Frame = -2

Query: 260 ISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 81
           ++EL GD+ +G   RT+VF NE HTLGN+LK II +Y +V+FCGYT+PHP E K+HFRIQ
Sbjct: 4   LAELAGDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ 63

Query: 80  ARETPALEVLKRGLKDLEMVCDHTI 6
           +R   A+++LKRGL+DLE +CDHTI
Sbjct: 64  SRRDRAIDILKRGLEDLEGLCDHTI 88


>AE014134-3052|AAF53770.1|  105|Drosophila melanogaster CG10685-PA
           protein.
          Length = 105

 Score =  125 bits (302), Expect = 1e-29
 Identities = 52/85 (61%), Positives = 69/85 (81%)
 Frame = -2

Query: 260 ISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 81
           ++EL GD+ +G   RT+VF NE HTLGN+LK II +Y +V+FCGYT+PHP E K+HFRIQ
Sbjct: 4   LAELAGDEKNGEGSRTFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQ 63

Query: 80  ARETPALEVLKRGLKDLEMVCDHTI 6
           +R   A+++LKRGL+DLE +CDHTI
Sbjct: 64  SRRDRAIDILKRGLEDLEGLCDHTI 88


>AE014134-2838|AAF53606.1|  117|Drosophila melanogaster CG6840-PA
           protein.
          Length = 117

 Score = 44.0 bits (99), Expect = 5e-05
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = -2

Query: 212 YVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ 81
           +    E HTLGN ++  + K  +V F GY VPHP E K   RIQ
Sbjct: 33  FTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQ 76


>BT001454-1|AAN71209.1|  136|Drosophila melanogaster GM15177p
           protein.
          Length = 136

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -2

Query: 155 KYDDVEFCGYTVPHPAESKMHFRIQ 81
           K  +V F GY VPHP E K   RIQ
Sbjct: 71  KDPNVLFAGYKVPHPLEHKFVIRIQ 95


>BT011368-1|AAR96160.1|  943|Drosophila melanogaster RE64037p
           protein.
          Length = 943

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRNVHSVTFYNHC 290
           LR VHSV +YNHC
Sbjct: 716 LRIVHSVDYYNHC 728


>AY058743-1|AAL13972.1|  769|Drosophila melanogaster LP08544p
           protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRNVHSVTFYNHC 290
           LR VHSV +YNHC
Sbjct: 542 LRIVHSVDYYNHC 554


>AE013599-148|AAM68345.1|  878|Drosophila melanogaster CG7843-PB,
           isoform B protein.
          Length = 878

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRNVHSVTFYNHC 290
           LR VHSV +YNHC
Sbjct: 712 LRIVHSVDYYNHC 724


>AE013599-147|AAM68344.1|  943|Drosophila melanogaster CG7843-PD,
           isoform D protein.
          Length = 943

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRNVHSVTFYNHC 290
           LR VHSV +YNHC
Sbjct: 716 LRIVHSVDYYNHC 728


>AE013599-146|AAM68343.1|  943|Drosophila melanogaster CG7843-PC,
           isoform C protein.
          Length = 943

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRNVHSVTFYNHC 290
           LR VHSV +YNHC
Sbjct: 716 LRIVHSVDYYNHC 728


>AE013599-145|AAF57281.2|  943|Drosophila melanogaster CG7843-PA,
           isoform A protein.
          Length = 943

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 252 LRNVHSVTFYNHC 290
           LR VHSV +YNHC
Sbjct: 716 LRIVHSVDYYNHC 728


>AY119008-1|AAM50868.1|  102|Drosophila melanogaster LP03531p
           protein.
          Length = 102

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 242 DDDSGPTCRTYVFRN--ESHTLGNSLKCIINKYDD--VEFCGYTVP 117
           ++ + PTCRTYV+        L     C +N+Y D  ++ C   VP
Sbjct: 47  ENQADPTCRTYVYCYVVNGSVLSLIKSCKVNQYFDPNLKMCRSEVP 92


>AE014296-586|AAN11539.1|  102|Drosophila melanogaster CG32284-PA
           protein.
          Length = 102

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -2

Query: 242 DDDSGPTCRTYVFRN--ESHTLGNSLKCIINKYDD--VEFCGYTVP 117
           ++ + PTCRTYV+        L     C +N+Y D  ++ C   VP
Sbjct: 47  ENQADPTCRTYVYCYVVNGSVLSLIKSCKVNQYFDPNLKMCRSEVP 92


>AY113409-1|AAM29414.1|  525|Drosophila melanogaster RE13562p
           protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 228 P*IVITRKLRNVHSVTFYNHCLGNIIL 308
           P I +  + RNV ++TFY+ CL  IIL
Sbjct: 368 PCIQMELEQRNVKAMTFYDICLDFIIL 394


>AE014298-1174|AAF46370.2|  525|Drosophila melanogaster CG12125-PA
           protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 228 P*IVITRKLRNVHSVTFYNHCLGNIIL 308
           P I +  + RNV ++TFY+ CL  IIL
Sbjct: 368 PCIQMELEQRNVKAMTFYDICLDFIIL 394


>AE014297-2988|AAN13869.1|  476|Drosophila melanogaster CG32491-PL,
           isoform L protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 230 LNRHHQEAQKCSFCY 274
           L RHH+ AQ C  CY
Sbjct: 462 LTRHHEHAQHCLQCY 476


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,889,718
Number of Sequences: 53049
Number of extensions: 290666
Number of successful extensions: 612
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 695070486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)