Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a06
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-12|CAA80165.1|  144|Caenorhabditis elegans Hypothetical p...    76   5e-15
Z81135-2|CAB03455.1|  122|Caenorhabditis elegans Hypothetical pr...    50   5e-07
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    27   2.3  
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    27   4.1  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     27   4.1  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    27   4.1  
AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical ...    27   4.1  
AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a prot...    27   4.1  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    26   5.4  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    26   5.4  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    26   5.4  
AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical ...    26   5.4  
U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    26   7.2  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    26   7.2  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    25   9.5  

>Z22179-12|CAA80165.1|  144|Caenorhabditis elegans Hypothetical
           protein F58A4.9 protein.
          Length = 144

 Score = 76.2 bits (179), Expect = 5e-15
 Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 1/89 (1%)
 Frame = -2

Query: 284 IVKSNRMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAE 105
           +    +M I + P   +  P+  T +   E HT+GNS+K I+++ D+VEFCGY VPHP E
Sbjct: 40  VPSKKKMEILD-PKSFEQDPSNLTLIMYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLE 98

Query: 104 SKMHFRIQARE-TPALEVLKRGLKDLEMV 21
            K+ FR+Q ++   ALEVL +  + +E +
Sbjct: 99  DKILFRVQTKDGINALEVLAKAFESVEQI 127


>Z81135-2|CAB03455.1|  122|Caenorhabditis elegans Hypothetical
           protein W01G7.3 protein.
          Length = 122

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 239 DDSGPTCRTYVFRNESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQ-ARETPA 63
           D   P    +    E HTLGN LK  + K  +V F GY  PHP E K+  RIQ    T  
Sbjct: 23  DTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNTTP 82

Query: 62  LEVLKRGLKDL 30
            + L   + DL
Sbjct: 83  ADALTTAITDL 93


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 142 TSSYLFIIHFNEFPNVWLSFRKTYVLQVXXXXXXXXXXXMFILLLFTITVWVIL 303
           T+SY+ +I F    NVW+S++   V              M IL +    + V+L
Sbjct: 14  TTSYITVILFGNIGNVWVSWKVGIVFVFDKSSLVPRNIVMLILFICVADLLVLL 67


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 67  GVSLACILKCIFDSAGCGTVYPQNSTSSYLFIIHFNEFPNVWLSF 201
           G    C+L  +F S G    Y    TSS+LF  +F  F N +  +
Sbjct: 67  GTCKDCVLSNLFASLGKDNQY----TSSFLFFCYFLHFGNAYFQY 107



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 67  GVSLACILKCIFDSAGCGTVYPQNSTSSYLFIIHFNEFPNVWLSF 201
           G    C+L  +F S G    Y    TSS+LF  +F  F N +  +
Sbjct: 295 GTCKDCVLSNLFASLGKDNQY----TSSFLFFCYFLHFGNAYFQY 335


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 78  GLYPKMHF*FCWVWNGISTEFNIIIF 155
           G YP   + FCWV+   S  F +++F
Sbjct: 500 GYYPSAWWKFCWVFATPSVCFGVLLF 525


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 78  GLYPKMHF*FCWVWNGISTEFNIIIF 155
           G YP   + FCWV+   S  F +++F
Sbjct: 500 GYYPSAWWKFCWVFATPSVCFGVLLF 525


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 78  GLYPKMHF*FCWVWNGISTEFNIIIF 155
           G YP   + FCWV+   S  F +++F
Sbjct: 500 GYYPSAWWKFCWVFATPSVCFGVLLF 525


>AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical
           protein M01B12.5a protein.
          Length = 506

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -2

Query: 197 ESHTLGNSLKCIINKYDDVEFCGYTVPHPAESKMHF 90
           E  T+    + ++N  DD  F    +PH  E  +HF
Sbjct: 355 EMETIIEEERVLVNSEDDSLFMNAFIPHKLEHVLHF 390


>AC199172-11|ABO33270.1|  311|Caenorhabditis elegans F-box a protein
           protein 50, isoforma protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 161 INKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKDLEMVCDH 12
           IN Y D     YT      S +++  Q +ET     +   +KDL++V  H
Sbjct: 68  INMYLDRIRINYTDSANGHSNVNYNEQKKETDEENFMDSAVKDLKIVLKH 117


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 267 SVTFYNHCLGNIILIGTVF 323
           S++ YNHCL   +L+   F
Sbjct: 158 SISVYNHCLKGFVLVANTF 176


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 267 SVTFYNHCLGNIILIGTVF 323
           S++ YNHCL   +L+   F
Sbjct: 158 SISVYNHCLKGFVLVANTF 176


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 267 SVTFYNHCLGNIILIGTVF 323
           S++ YNHCL   +L+   F
Sbjct: 158 SISVYNHCLKGFVLVANTF 176


>AF098993-5|AAC67468.1|  325|Caenorhabditis elegans Hypothetical
           protein T10B11.6 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 249 SW**RFRAYLQNIRLPK*KPYIREFIKMYY 160
           +W    RAYLQ I L    P++R F+ +YY
Sbjct: 218 TWFLNLRAYLQ-IPLLTMVPFLRSFVSIYY 246


>U40953-3|AAB52650.1|  342|Caenorhabditis elegans Hypothetical
           protein F53B1.4 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 179 NSLKCIINKYDDVEFCGYTVPHPAESKMHFRIQARETPALEVLKRGLKD 33
           N +    NK+ + +F  Y       S +H   + RE+P  + ++  L+D
Sbjct: 23  NYINFTFNKWKNTKFINYDKLAFGASPLHVEKEIRESPRYKFVEAALED 71


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 66  RCFSGLYPKMHF*FCWVWNGISTEFNIIIFVYNT 167
           R   G YP +++  CW  + +      I+ VYN+
Sbjct: 550 RAMLGFYPGIYWRVCWTCSPVFISVIFIMTVYNS 583


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 66  RCFSGLYPKMHF*FCWVWNGISTEFNIIIFVYNT 167
           R   G YP +++  CW  + +      I+ VYN+
Sbjct: 550 RAMLGFYPGIYWRVCWTCSPVFISVIFIMTVYNS 583


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 323 EYGTDQNNITQTVIVKSN-RMNISELPGDDDSGPTCRTYVFRNESHTLGNSLKCI 162
           E    ++N ++    KS  +   S+LP   +S P  +  +  +ES  + NS KCI
Sbjct: 544 ENSAKKSNFSEEKPAKSRFQFTYSDLPAFLNSEPQYKPMIRYSESECVKNSEKCI 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,849,520
Number of Sequences: 27780
Number of extensions: 156432
Number of successful extensions: 446
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)