Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a06
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   2.1  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   4.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   6.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -2

Query: 134 CGYTVPHPAESKMHFRIQARETP 66
           CG T   PA    H+R    E P
Sbjct: 97  CGKTFAVPARLTRHYRTHTGEKP 119


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +3

Query: 249 KLRNVHSVTF 278
           KLRNVHS +F
Sbjct: 214 KLRNVHSSSF 223


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 179 SLMYGFHFGRRMFCR*ALNRHHQEAQKCS 265
           S+ YG  F   + C   L+ +  ++Q C+
Sbjct: 148 SVTYGMRFTTTLACMMDLHYYPLDSQNCT 176


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 23  PFLDLSDLFLELPMQVFLWLVS*NAFLILLGVERYIHRIQHHHI 154
           P LD  D   + P  +    VS  A ++    E Y   +QH  +
Sbjct: 324 PNLDYHDYSRQFPRDLTTQTVSTTADVLQEEEEEYSPSVQHEFV 367


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 107 LLGVERYIHRIQHHHI 154
           LLG +   HRI+H  I
Sbjct: 422 LLGADLVEHRIRHSQI 437


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 105 IKNAF*DTSQRNTCIGSSK 49
           I+N     ++RN+C+GS++
Sbjct: 366 IRNFNESENRRNSCLGSTE 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,357
Number of Sequences: 438
Number of extensions: 1948
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)