Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a05
         (843 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     32   0.50 
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     30   2.0  
02_05_0514 + 29686263-29686728,29687078-29687313,29687435-296875...    28   8.1  
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    28   8.1  

>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
 Frame = +3

Query: 402  LTSTYYQSIELVFLFKIASSACSI---SNFFRTLLAL*LGMSSTLDSVFLLIMAGLTTIM 572
            L ST  ++ +L  L KI S  C I   +++  TLL    G    LD + ++    +T I 
Sbjct: 1229 LHSTLLKNADLQILAKIPSICCLILLGNSYDDTLLTFNKGEFPKLD-LLIVECPTITNIS 1287

Query: 573  NTRNNMSRYKKMLFSFLSYTKLNMVSAPNNKYKFIFIPLLYSL 701
             T       +K+++SF   TK+N +S  NN  K   + L+  L
Sbjct: 1288 FTEGAAPMLEKIIWSF---TKMNSLSGINNLSKLKELELIGDL 1327


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +3

Query: 570 MNTRNNMSRYKKMLFSFLSYTKLNMVSAPNNKYKFIFIPLLYSLR*YNNDSPDEPDELRL 749
           +NTR     YK   F F S  K ++       Y +IF+ +L  +R Y    PD+   L  
Sbjct: 60  LNTRVPAPFYKHDFFFFKSLLKYDL-------YFYIFVHILNKVRGYVYYCPDKKVSLHP 112

Query: 750 CCA 758
           CCA
Sbjct: 113 CCA 115


>02_05_0514 +
           29686263-29686728,29687078-29687313,29687435-29687575,
           29687685-29687915
          Length = 357

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/88 (23%), Positives = 42/88 (47%)
 Frame = -3

Query: 289 YPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTF 110
           Y  +D +L  K ++ +F +  +++ KIY   +      ++ +R +  ++     N S   
Sbjct: 31  YSQEDLALPNK-LVGLFTSWSVKHSKIYASPKEKVKRYEIFKRNLRHIVETNRRNGSYWL 89

Query: 109 TLHRFVDDNVLTQDELSFLANFLVTKPG 26
            L+ F D   +  +E  F A++L  KPG
Sbjct: 90  GLNHFAD---IAHEE--FKASYLGLKPG 112


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +3

Query: 375 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 542
           KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 99  KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,868
Number of Sequences: 37544
Number of extensions: 289903
Number of successful extensions: 641
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)