Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a05
         (843 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.       30   3.5  
BT010284-1|AAQ23602.1| 2727|Drosophila melanogaster LP05936p pro...    30   4.6  
AE014134-1818|AAF52899.1| 2727|Drosophila melanogaster CG5604-PA...    30   4.6  

>AY180917-1|AAN87269.1| 2360|Drosophila melanogaster ORF protein.
          Length = 2360

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = -3

Query: 307  WLCE--QVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSR 164
            WL +  +++P +  S++   +IN  LND+I+ D IY+L+E   S  KL R
Sbjct: 1235 WLADPKELWPRQQ-SVEEPVLINTVLNDKID-DPIYELIERYSSIEKLIR 1282


>BT010284-1|AAQ23602.1| 2727|Drosophila melanogaster LP05936p protein.
          Length = 2727

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -3

Query: 235  NDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSF 56
            NDE EN+  Y+ V        +SR  + F+    + N  V  T  +  DD  + + + S 
Sbjct: 1920 NDEEENEDEYEEVGNTLLQVMVSRNLLTFMDDEAMENRLVGVTKRKSWDDEFVLKRQFSA 1979

Query: 55   LANFLVTKPGRS 20
            L      +PGR+
Sbjct: 1980 LIPAFDPRPGRT 1991


>AE014134-1818|AAF52899.1| 2727|Drosophila melanogaster CG5604-PA
            protein.
          Length = 2727

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -3

Query: 235  NDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSF 56
            NDE EN+  Y+ V        +SR  + F+    + N  V  T  +  DD  + + + S 
Sbjct: 1920 NDEEENEDEYEEVGNTLLQVMVSRNLLTFMDDEAMENRLVGVTKRKSWDDEFVLKRQFSA 1979

Query: 55   LANFLVTKPGRS 20
            L      +PGR+
Sbjct: 1980 LIPAFDPRPGRT 1991


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,118,341
Number of Sequences: 53049
Number of extensions: 538081
Number of successful extensions: 1327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)