Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a04
         (460 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS...   209   3e-56
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   2.9  
AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.           22   9.0  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    22   9.0  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    22   9.0  

>Z69977-1|CAA93817.1|  151|Anopheles gambiae ribosomal protein RS11
           protein.
          Length = 151

 Score =  209 bits (511), Expect = 3e-56
 Identities = 101/147 (68%), Positives = 120/147 (81%), Gaps = 1/147 (0%)
 Frame = -3

Query: 440 MADQTE-KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 264
           MADQ   +AFQKQ  + LNRK   ++K +R H ++GLGFKTP+EAI GTYIDKKCPFTG+
Sbjct: 1   MADQQNIRAFQKQLGINLNRKNVSRKKGLRMHHSIGLGFKTPKEAITGTYIDKKCPFTGH 60

Query: 263 VSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDI 84
           +SIRGRILTGVV+K  +   + IRRDYL ++ KY+ FEKR+RNM +HLSPCFRDVE GDI
Sbjct: 61  ISIRGRILTGVVRKCIV--LLYIRRDYLQFIRKYDTFEKRNRNMRLHLSPCFRDVEAGDI 118

Query: 83  VTIGECRPLSKTVRFNVLKVSKGKGSK 3
           VT+GECRPLSKTVRFNVLK SK  GSK
Sbjct: 119 VTLGECRPLSKTVRFNVLKESKMAGSK 145


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 237  GEDAAADRNVASEGTLLVNVGT 302
            GED   D+   S+GTLL  +GT
Sbjct: 1268 GEDDTGDKKTDSDGTLL-EIGT 1288


>AY645022-1|AAT92558.1|  165|Anopheles gambiae hairy protein.
          Length = 165

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 360 HASP*ECWFRLQNSQRGD*GYLH 292
           H  P EC   + +S     GYLH
Sbjct: 82  HYEPMECHSAVNSSSNSSTGYLH 104


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 365 SSSCHLSCSGKRWPVS 412
           +SSC L  +G RW VS
Sbjct: 447 ASSCFLPEAGARWDVS 462


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 362 PSSSCHLSCSGKRWPVSETLSLSDPPFCLTMK 457
           P +  H  C+G+RW   +T    +  F L +K
Sbjct: 234 PINRQHTPCAGRRW---KTKQFRENSFLLALK 262


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,408
Number of Sequences: 2352
Number of extensions: 9389
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 39544623
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)