Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a03
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    34   0.024
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.89 

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 531 DGLVRVDHGHRGQNHAHQWWDFVKVAAG-YLQNLGVLVRISVDPAQ-LRDKILCFSTLFY 704
           DGL R+D   RG     +  D+VKV AG Y  + G++VRIS D    L D ++   T+F 
Sbjct: 506 DGL-RLDVPSRGLRKRFRHGDYVKVIAGKYKDDTGMVVRISKDEVTFLSDTLMTELTVFS 564

Query: 705 LEL 713
            +L
Sbjct: 565 RDL 567


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 518 YLDFNTGSYNVGKDILPECTVVLDTVLNMHVYDWWHPKYPHFDNKTP 378
           Y++ +T  Y + KD +P       T ++  V+D    KYP++  KTP
Sbjct: 531 YIETSTRVYEMPKDTIPSR---FKTSISTEVHDGRLKKYPYYHVKTP 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,315,448
Number of Sequences: 5004
Number of extensions: 64236
Number of successful extensions: 158
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)