Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a03
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790...    31   1.2  
08_01_0680 - 5958066-5960253,5960707-5961503                           28   8.7  

>07_01_0935 +
           7905748-7905765,7906071-7906096,7906142-7906166,
           7906891-7907700,7907803-7907934,7908102-7908470,
           7908540-7908671,7909135-7909662
          Length = 679

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 49  STIRAHWTSYRQRTLSDTRSKTNTHYINVSMYALVTSD*CNRYSSNTLSSHTHRHHNLTK 228
           ++  + W+SY    + D R    +HY+  ++  L+T   C R S   +S +    H +  
Sbjct: 288 TSFTSDWSSYDYCLVLDQRCSDLSHYLYFNVVGLITRHDCERTSGYAMSWYVAISHTVAS 347

Query: 229 L 231
           +
Sbjct: 348 I 348



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 67  WTSYRQRTLSDTRSKTNTHYINVSMYALVTSD*CNRYSSNTLS 195
           W+SY    L D R    +HY+  ++  L+T   C R S   +S
Sbjct: 461 WSSYDYCLLPDQRCSDFSHYLYFNVVGLITRHDCERTSGYAIS 503


>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 783  AGQLIRTTFCCHRLN--FLHEHVICVIQSPY 869
            A  LIR +F CHR++  FL  H++ ++ S +
Sbjct: 935  ANSLIRHSFTCHRVSALFLLNHILAILFSKF 965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,435,311
Number of Sequences: 37544
Number of extensions: 455436
Number of successful extensions: 1236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)