Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a03
         (890 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1672|AAF58401.2|  312|Drosophila melanogaster CG12765-P...    30   3.7  

>AE013599-1672|AAF58401.2|  312|Drosophila melanogaster CG12765-PA
           protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
 Frame = -1

Query: 680 DFITELGRIDANPDQDTQVLQVTCRNFHEVPPLMGMILSSVTMVHSHKAIHQRLYLDFNT 501
           D  T+L     NP +   +L V CR+F  VP    +        +  +A  + L  D   
Sbjct: 213 DDATKLAPTFCNPHEGVVLLVVICRHF--VPTSNHLAYGPQQQRYRLRATRELLCTDMRA 270

Query: 500 GSYNV--GKDILPECTVVL--DTVLNMHVYDWWHPKYPHF 393
            +  +   +D     +V +  D +    V  WWHP +  F
Sbjct: 271 KNLELDFAEDGCRNVSVTVKHDRIEKYKVLPWWHPDFQRF 310


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,234,486
Number of Sequences: 53049
Number of extensions: 773105
Number of successful extensions: 2169
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2166
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4352837424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)