Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a03
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29378-10|AAP40541.1|  975|Caenorhabditis elegans Adamts family ...    29   4.5  
U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family p...    29   4.5  
AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like p...    29   4.5  
Z74039-6|CAA98505.2|  331|Caenorhabditis elegans Hypothetical pr...    29   5.9  
Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U29378-10|AAP40541.1|  975|Caenorhabditis elegans Adamts family
           protein 2, isoform c protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 362 RPPCTLASCYQNVGIWGATSRKRACSELCPK 454
           R  C +A+C QN GIW   +    CS +C K
Sbjct: 852 RRSCNVATC-QNDGIWSLWNEWSDCSRVCGK 881


>U29378-9|AAA68721.4| 1020|Caenorhabditis elegans Adamts family
           protein 2, isoform a protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 362 RPPCTLASCYQNVGIWGATSRKRACSELCPK 454
           R  C +A+C QN GIW   +    CS +C K
Sbjct: 852 RRSCNVATC-QNDGIWSLWNEWSDCSRVCGK 881


>AB072347-1|BAC41253.1| 1020|Caenorhabditis elegans ADAMTS-like
           protease protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 362 RPPCTLASCYQNVGIWGATSRKRACSELCPK 454
           R  C +A+C QN GIW   +    CS +C K
Sbjct: 852 RRSCNVATC-QNDGIWSLWNEWSDCSRVCGK 881


>Z74039-6|CAA98505.2|  331|Caenorhabditis elegans Hypothetical
           protein K03B8.6 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 866 RALYHTYDVFVKKVQTMTA--EGRAYQLARRRCVSVWFYKG 750
           +A+  ++DV  +K   +T    GR Y  AR R   +WF  G
Sbjct: 127 KAMALSFDVCPEKFDAITKGINGRTYVFARERVYQIWFEDG 167


>Z47358-8|CAA87433.1|  702|Caenorhabditis elegans Hypothetical
           protein ZK1307.6 protein.
          Length = 702

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 106 SKTNTHYINVSMYALVTSD*CNRYSSNTLSSHTHRHHN 219
           S ++TH  + S+  L         S ++LSSH H+HHN
Sbjct: 109 SDSSTHPSSSSLAGLGALATAPSSSQSSLSSHPHQHHN 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,649,218
Number of Sequences: 27780
Number of extensions: 373554
Number of successful extensions: 1067
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)