Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a03
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.70 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    25   0.93 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 485 GKDILPECTVVLDTVLNMHVYDWWHPKY 402
           G  ++P CT      L+ +VY   HPKY
Sbjct: 308 GVTMIPACTCKAVACLDPYVYAISHPKY 335


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 566 SSVTMVHSHKAIHQRLYLDFNTGS 495
           SS  + HS   IH+  Y+D++ GS
Sbjct: 27  SSKNLEHSMNVIHEWKYIDYDFGS 50


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 566 SSVTMVHSHKAIHQRLYLDFNTGS 495
           S+  + HS K I++  ++DF+ GS
Sbjct: 29  SANNLAHSMKVIYEWKHIDFDFGS 52


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 38  SSAYPRYEHTGRLIDN 85
           SSAYP +   GR +DN
Sbjct: 613 SSAYPNFCAFGRYVDN 628


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 410 PKYPHFDNKTPTCTEDDEVVPML 342
           PK+P  DN     TE    +P+L
Sbjct: 211 PKFPSMDNINGLSTESKADLPLL 233


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 548 GPWSPRTESCPSVVGLRESCGRL 616
           G WS + E   SVVGL    G L
Sbjct: 20  GMWSSKIEFILSVVGLAIGLGNL 42


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 548 GPWSPRTESCPSVVGLRESCGRL 616
           G WS + E   SVVGL    G L
Sbjct: 73  GMWSSKIEFILSVVGLAIGLGNL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,584
Number of Sequences: 438
Number of extensions: 4720
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)