Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a01
         (216 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41678 Cluster: Capsid protein p24; n=14; Nucleopolyhed...    79   2e-14
UniRef50_Q8QLM2 Cluster: P24 capsid; n=4; Nucleopolyhedrovirus|R...    34   0.55 
UniRef50_Q0N3Z1 Cluster: P24; n=7; Nucleopolyhedrovirus|Rep: P24...    33   1.3  
UniRef50_Q31JH2 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_Q55EH2 Cluster: Putative uncharacterized protein; n=1; ...    31   3.8  
UniRef50_P08987 Cluster: Glucosyltransferase-I precursor; n=10; ...    31   3.8  
UniRef50_A5CUN3 Cluster: Conserved membrane protein, AI-E2 famil...    31   5.1  
UniRef50_Q8IB77 Cluster: GTP-binding protein, putative; n=1; Pla...    31   5.1  
UniRef50_Q237T4 Cluster: Putative uncharacterized protein; n=1; ...    31   6.7  
UniRef50_Q8A2T3 Cluster: Putative uncharacterized protein; n=1; ...    30   8.9  
UniRef50_Q7USP5 Cluster: Probable diaminopimelate decarboxylase;...    30   8.9  
UniRef50_A7JX22 Cluster: MFS family major facilitator transporte...    30   8.9  
UniRef50_Q9LIH5 Cluster: Genomic DNA, chromosome 3, TAC clone:K2...    30   8.9  
UniRef50_A2FU78 Cluster: Dynein heavy chain family protein; n=1;...    30   8.9  

>UniRef50_P41678 Cluster: Capsid protein p24; n=14;
           Nucleopolyhedrovirus|Rep: Capsid protein p24 -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 198

 Score = 79.0 bits (186), Expect = 2e-14
 Identities = 35/39 (89%), Positives = 37/39 (94%)
 Frame = -2

Query: 185 MKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLE 69
           M TDAQSTSNT NFMYSPD++LEVVIITNSDGDHDGYLE
Sbjct: 1   MNTDAQSTSNTRNFMYSPDSSLEVVIITNSDGDHDGYLE 39


>UniRef50_Q8QLM2 Cluster: P24 capsid; n=4; Nucleopolyhedrovirus|Rep:
           P24 capsid - Mamestra configurata NPV-A
          Length = 228

 Score = 34.3 bits (75), Expect = 0.55
 Identities = 16/26 (61%), Positives = 17/26 (65%)
 Frame = -2

Query: 146 FMYSPDNNLEVVIITNSDGDHDGYLE 69
           F Y  D  LEVVII N D D DGY+E
Sbjct: 17  FQYD-DQTLEVVIIENGDDDRDGYIE 41


>UniRef50_Q0N3Z1 Cluster: P24; n=7; Nucleopolyhedrovirus|Rep: P24 -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 265

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 146 FMYSPDNNLEVVIITNSDGDHDGYLE 69
           F Y  D  +EV+II N D D DGY+E
Sbjct: 41  FKYDEDIVIEVLIIDNGDDDRDGYVE 66


>UniRef50_Q31JH2 Cluster: Putative uncharacterized protein; n=1;
            Thiomicrospira crunogena XCL-2|Rep: Putative
            uncharacterized protein - Thiomicrospira crunogena
            (strain XCL-2)
          Length = 1597

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 194  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLE 69
            NG     A+      +F+Y  DN  +V II N D + D Y+E
Sbjct: 1471 NGGDTATAEVNDAGDHFLYGLDNEDDVFIIENEDDEQDSYIE 1512


>UniRef50_Q55EH2 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 787

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 161 SNTHNFMYSPDNNLEVVI-ITNSDGDHDGYLEPNRRRQNH 45
           +N +NF  S +NN +++  ITN+D D++ Y   N    N+
Sbjct: 111 NNNNNFNNSNNNNNKIIYNITNNDNDNNNYNNNNNNNNNN 150


>UniRef50_P08987 Cluster: Glucosyltransferase-I precursor; n=10;
            Streptococcus|Rep: Glucosyltransferase-I precursor -
            Streptococcus mutans
          Length = 1476

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 194  NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLEPNRRRQN 48
            NG M T AQS +  + +  S    L   I+ N DG +  Y    RR +N
Sbjct: 1103 NGYMVTGAQSINGVNYYFLSNGLQLRDAILKNEDGTYAYYGNDGRRYEN 1151


>UniRef50_A5CUN3 Cluster: Conserved membrane protein, AI-E2 family;
           n=1; Clavibacter michiganensis subsp. michiganensis
           NCPPB 382|Rep: Conserved membrane protein, AI-E2 family
           - Clavibacter michiganensis subsp. michiganensis (strain
           NCPPB 382)
          Length = 377

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 139 ILPTTIWRWSSLPIRTAITMAIWNLTAAAKIMSPFI 32
           +L    W W  L I  A+  A+W L A  +++ PF+
Sbjct: 30  VLLAAEWSWRLLVIGIAVAAAVWILIAVKEVVIPFL 65


>UniRef50_Q8IB77 Cluster: GTP-binding protein, putative; n=1;
           Plasmodium falciparum 3D7|Rep: GTP-binding protein,
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 773

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 167 STSNTHNFMYSPDNNLEVVIITNSDGDHDGYLEPNRRRQNHV 42
           + SN HN  Y+ DNNL    I N   D+   L  N  ++N++
Sbjct: 539 NNSNIHNINYNVDNNLN--NINNKHNDNSHILNINNNKKNNI 578


>UniRef50_Q237T4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1128

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -2

Query: 200 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLEPNRRRQNHVT 39
           YKN  +  D   +   +      D   ++   +NS    DGY++ N+++ N  T
Sbjct: 250 YKNNQINEDENQSETIYEEEKQNDKEEQIDNTSNSKNQQDGYIDKNQQQNNQTT 303


>UniRef50_Q8A2T3 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides thetaiotaomicron|Rep: Putative
           uncharacterized protein - Bacteroides thetaiotaomicron
          Length = 310

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 200 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
           Y+N ++K  A STS   +F+ S     +++++  +DG+ D
Sbjct: 56  YENALLKVSAMSTSEQVSFLNSLSFKSQMILMQEADGELD 95


>UniRef50_Q7USP5 Cluster: Probable diaminopimelate decarboxylase;
           n=3; Planctomycetaceae|Rep: Probable diaminopimelate
           decarboxylase - Rhodopirellula baltica
          Length = 555

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 33  IKGDMILAAAVRFQIAIVIAVRIGNDDHLQIVVGRIHEV---VRVRCRLG 173
           IK D ++   ++ Q+ I +     NDD LQ+VV R +E+    R+  RLG
Sbjct: 198 IKSDSLIDLCLQQQVCIAV----DNDDELQVVVDRANELGRQARIALRLG 243


>UniRef50_A7JX22 Cluster: MFS family major facilitator transporter;
           n=3; Pasteurellaceae|Rep: MFS family major facilitator
           transporter - Mannheimia haemolytica PHL213
          Length = 384

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 115 WSSLPIRTAITMAIWNLTAAAKIMSPFISXRRF 17
           WS+  I TA+T   W L   A+I+   +S R F
Sbjct: 232 WSNASISTAMTSLFWGLAVVAEILFFLVSKRLF 264


>UniRef50_Q9LIH5 Cluster: Genomic DNA, chromosome 3, TAC
           clone:K24M9; n=2; Arabidopsis thaliana|Rep: Genomic DNA,
           chromosome 3, TAC clone:K24M9 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 676

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 197 KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLEPNRRRQN 48
           +NG  KTD  S            N+ E V+  + DGD DG  E N++ ++
Sbjct: 542 ENGDKKTDEASKEEEGKKTGEDTNDAENVVDEDEDGDDDGSDEENKKEKD 591


>UniRef50_A2FU78 Cluster: Dynein heavy chain family protein; n=1;
            Trichomonas vaginalis G3|Rep: Dynein heavy chain family
            protein - Trichomonas vaginalis G3
          Length = 4012

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 12   RSNRRLLIKGDMILAAAVRFQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRCRL 170
            R N +  +  D +   A+ +   I++A ++  DD   I +  +H V +V C L
Sbjct: 1921 RDNFKKYMMKDALPRKALEYTSMIIVAQQVNQDDENSIKIAFLHSVFKVFCGL 1973


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,341,145
Number of Sequences: 1657284
Number of extensions: 5030286
Number of successful extensions: 12979
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12969
length of database: 575,637,011
effective HSP length: 50
effective length of database: 492,772,811
effective search space used: 10348229031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)