Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a01
         (216 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   2.4  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   3.1  
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    24   3.1  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           23   4.1  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    23   5.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   7.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    23   7.2  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    23   7.2  
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|...    23   7.2  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    23   7.2  
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    22   9.6  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    22   9.6  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    22   9.6  

>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 185 MKTDAQSTSNTHNFMYSPDNNLEVV 111
           M     ST+N+ +F+ SP NN +++
Sbjct: 451 MSLQLPSTANSISFLSSPPNNNDII 475


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 NDDHLQIVVGRIHEVVRVRCRLGVRFHN 188
           N DH+ +V G    + R++  L  +FHN
Sbjct: 435 NADHIILVHGEQTNMGRLKSALASKFHN 462


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 139 ILPTTIWRWSSLPIRTAITMAIWNLTAA 56
           ILP T W      ++     A+W LTAA
Sbjct: 387 ILPLTEWIMHQPNVKPHDITAVWKLTAA 414


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 95  DGDHDGYLEPNRRRQNHVT 39
           DG+H GY +P++   N +T
Sbjct: 928 DGNHIGYYKPSKIIANRIT 946


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 107  ITNSDGDHDGYLEPNRRRQNHVTF 36
            + +S    D YLE  RRR+N +++
Sbjct: 1433 VQSSSELEDQYLERKRRRRNSISY 1456


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 171  PVDIEHAQLHVFSRQ 127
            P D E+A  HVFSRQ
Sbjct: 963  PPDTENAVDHVFSRQ 977


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 183 ENGRPVDIEHAQLHVFSRQQSGGGHHYQFG 94
           EN R  ++ H           GGG  YQFG
Sbjct: 304 ENFRKGEVAHTLGWPMRNDTYGGGFMYQFG 333


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 179 TDAQSTSNTHNFMYSPDNNLEVVIITNSDG 90
           TDA  + N+HN   +  NN + V +++  G
Sbjct: 359 TDASLSPNSHNTSDNEQNNEDYVSVSSLVG 388


>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 781

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = -2

Query: 170 QSTSNTHNFMYSPDNNLEVVIITNSDGDHDGYLEPNRRRQNHVTF 36
           + T N H+   + DNN E        G  +G  E +   +++  F
Sbjct: 73  RKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEF 117


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 161 SNTHNFMYSPDNNLEVVIITN 99
           S+   F+Y P + L +V+ITN
Sbjct: 51  SDNVRFVYQPLDELYIVLITN 71


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 78  AIVIAVRIGNDDHLQIVVGRIHEVVR 155
           AIVI   +G D+ +Q ++ ++ E  R
Sbjct: 115 AIVIGPGLGRDEWMQEIMAKVIEYAR 140


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -2

Query: 212 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNS 96
           L     + ++++ A+ +SNT N    P N + +  + +S
Sbjct: 232 LKAVENSDVIESSAEDSSNTDNPSTKPSNEMPISPLLSS 270


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 141 VFSRQQSGGGHHYQF 97
           VFS     GG HYQF
Sbjct: 33  VFSNDSKLGGLHYQF 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,010,362
Number of Sequences: 5004
Number of extensions: 18260
Number of successful extensions: 51
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)