Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a01
(216 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615... 29 0.39
06_01_0169 - 1346281-1349188,1350069-1350184 27 2.1
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 26 4.8
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754... 26 4.8
02_03_0085 + 15063444-15063889,15064324-15065311 26 4.8
09_03_0040 + 11816056-11819069,11819837-11820428 25 6.3
08_02_1040 - 23873354-23874509,23875645-23875796 25 6.3
12_01_0742 - 6656464-6656739 25 8.3
08_02_0632 + 19515234-19515374,19515489-19515656,19518907-195189... 25 8.3
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 25 8.3
03_06_0035 - 31201115-31203646 25 8.3
03_02_0521 - 9093932-9094252 25 8.3
>07_03_1779 -
29458889-29459249,29461107-29461283,29461374-29461573,
29461673-29462752
Length = 605
Score = 29.5 bits (63), Expect = 0.39
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 84 RWLFGT*PPPPKSCHLLLAXG 22
RWL G PPP CHLL G
Sbjct: 74 RWLVGDLNPPPPPCHLLPIQG 94
>06_01_0169 - 1346281-1349188,1350069-1350184
Length = 1007
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 212 LSGCYKNGIMKTDAQSTSNTHNFMYSPDNNLEVVII 105
+ C + IM+ S S NF+YS +N+ VI+
Sbjct: 493 VKSCRVHDIMRDIIVSISKEENFVYSTGDNVSTVIV 528
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 182 KTDAQSTSNTHNFMYSPDNNLEVVII 105
K+ S S+ +NF++SPD+N ++
Sbjct: 310 KSYITSPSDLNNFLFSPDSNFRQTVV 335
>05_07_0055 -
27374028-27374080,27374205-27374295,27374930-27375448,
27375544-27375779,27376363-27376846,27376993-27378282
Length = 890
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -1
Query: 63 PPPPKSCHLL 34
PPPP+ CHLL
Sbjct: 71 PPPPRRCHLL 80
>02_03_0085 + 15063444-15063889,15064324-15065311
Length = 477
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 111 HHYQFGRRSRWLFGT*PPPPKSCHLLLAXGG 19
HH+ RRSR G PPPP S H G
Sbjct: 42 HHWPRRRRSR---GLPPPPPPSPHSTAGPAG 69
>09_03_0040 + 11816056-11819069,11819837-11820428
Length = 1201
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 96 GRRSRWLFGT*PPPPK 49
GR+ RWL PPPK
Sbjct: 274 GRKKRWLMSVLNPPPK 289
>08_02_1040 - 23873354-23874509,23875645-23875796
Length = 435
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 200 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH 84
Y G M+ D + + + + PD EV +I+ D DH
Sbjct: 145 YLIGRMQMDGEEIAVVSSPLVEPDTIAEVPVISMDDDDH 183
>12_01_0742 - 6656464-6656739
Length = 91
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 129 QQSGGGHHYQFGRRSRWLFGT*PPPPKSC 43
Q+ G G H+ R+ G+ PPPP SC
Sbjct: 29 QRGGCGSHHHL--RAAAGLGSTPPPPDSC 55
>08_02_0632 +
19515234-19515374,19515489-19515656,19518907-19518993,
19519551-19519685,19519778-19519882,19519968-19520059,
19520147-19520252,19520320-19520424,19520516-19520929
Length = 450
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 140 YSPDNNLEVVIITNSDGDHDGYLEPNRRRQNH 45
+SPD E + + +D + G +E NRR Q+H
Sbjct: 415 FSPD--AEALYVGIADPTYGGLIEFNRRHQHH 444
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 177 GRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSR 82
GR Q+H SR+ G HH Q ++R
Sbjct: 150 GRRAPSPSPQMHAASRRHHHGRHHQQVAPKAR 181
>03_06_0035 - 31201115-31203646
Length = 843
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 128 NNLEVVIITNSDGDHDGYLEPNRRRQ 51
N LE++ I+N + DG P R Q
Sbjct: 397 NGLEIMKISNQENSLDGLFSPKRSSQ 422
>03_02_0521 - 9093932-9094252
Length = 106
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 206 GCYKNGIMKTDAQSTSNTHNF--MYSPDNNLEVVIITNSDGDHDG 78
G K+G+ + A + ++ + M SP L V+I ++DG H G
Sbjct: 16 GREKSGLPRKTASTLPSSPSLGPMSSPTRELPGVVILDNDGFHSG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,727,102
Number of Sequences: 37544
Number of extensions: 165889
Number of successful extensions: 394
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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