Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a01
(216 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY028785-1|AAK32959.1| 509|Anopheles gambiae cytochrome P450 pr... 25 0.24
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein. 22 3.0
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein. 22 3.0
AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein. 22 3.0
AY344829-1|AAR05800.1| 334|Anopheles gambiae ICHIT protein. 22 3.0
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign... 22 3.0
DQ219483-1|ABB29887.1| 961|Anopheles gambiae cryptochrome 2 pro... 21 3.9
AY785361-1|AAV52865.1| 960|Anopheles gambiae male-specific tran... 21 3.9
AY785360-1|AAV52864.1| 759|Anopheles gambiae male-specific tran... 21 3.9
AY725820-1|AAU50568.1| 593|Anopheles gambiae fruitless female-s... 21 3.9
AY725819-1|AAU50567.1| 569|Anopheles gambiae fruitless male-spe... 21 3.9
Y09951-1|CAA71082.1| 107|Anopheles gambiae histone H2a protein. 21 6.9
AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein p... 21 6.9
AY705396-1|AAU12505.1| 710|Anopheles gambiae nicotinic acetylch... 20 9.1
AY578812-1|AAT07317.1| 932|Anopheles gambiae wishful thinking p... 20 9.1
AY263175-1|AAP78790.1| 814|Anopheles gambiae TmcA-like protein ... 20 9.1
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different... 20 9.1
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal... 20 9.1
>AY028785-1|AAK32959.1| 509|Anopheles gambiae cytochrome P450
protein.
Length = 509
Score = 25.4 bits (53), Expect = 0.24
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 24 RLLIKGDMILAAAVRFQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRCRLGVR 179
R+L M A R Q A+ + V++ +DD + +H+ V R R GV+
Sbjct: 216 RMLAMVKMTFAMLFRAQ-AVKLGVKVTDDDLEAFFMNLVHDTVEHRERNGVQ 266
>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
Length = 1664
Score = 21.8 bits (44), Expect = 3.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = -2
Query: 149 NFMYSPDNNLEVVIITNSDGDHDGYLEPNRRRQNH 45
+F PD N I + + D L+ +++Q H
Sbjct: 613 DFPTGPDPNFNPNIFSEDEEDQQHLLQQQQQQQQH 647
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 123 SGGGHHYQFGRRSRW 79
SGGGH G SRW
Sbjct: 1425 SGGGHTGPAGLISRW 1439
>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
Length = 3398
Score = 21.8 bits (44), Expect = 3.0
Identities = 8/42 (19%), Positives = 19/42 (45%)
Frame = +3
Query: 39 GDMILAAAVRFQIAIVIAVRIGNDDHLQIVVGRIHEVVRVRC 164
G+M+ + +V V + N +Q+ ++H ++ C
Sbjct: 1391 GEMVPKVDDMLNVLMVELVNLNNQKRVQLTGAKVHHIMSNWC 1432
>AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 21.8 bits (44), Expect = 3.0
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = -3
Query: 136 LPTTIWRWSSL--PIRTAITMAIW 71
+PTT WS L P T T +W
Sbjct: 232 VPTTTTTWSDLPPPPPTTTTTTVW 255
>AY344829-1|AAR05800.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 21.8 bits (44), Expect = 3.0
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = -3
Query: 136 LPTTIWRWSSL--PIRTAITMAIW 71
+PTT WS L P T T +W
Sbjct: 233 VPTTTTTWSDLPPPPPTTTTTTVW 256
>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
FGF-signaling promoter protein.
Length = 1197
Score = 21.8 bits (44), Expect = 3.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 20 PPXANKR*HDFGGGG*VPNSHRDRRP 97
PP N + GGGG HRD P
Sbjct: 526 PPNYNLLNYGSGGGGAEMGCHRDIDP 551
>DQ219483-1|ABB29887.1| 961|Anopheles gambiae cryptochrome 2
protein.
Length = 961
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = -2
Query: 179 TDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
T A + +N H+ + DN+ + + N D D
Sbjct: 758 TKADNMNNNHSDQLTGDNSADERAVPNDADDDD 790
>AY785361-1|AAV52865.1| 960|Anopheles gambiae male-specific
transcription factor FRU-MA protein.
Length = 960
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 159 EHAQLHVFSRQQSGGGHHYQ 100
EH QL +QQ HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256
>AY785360-1|AAV52864.1| 759|Anopheles gambiae male-specific
transcription factor FRU-MB protein.
Length = 759
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 159 EHAQLHVFSRQQSGGGHHYQ 100
EH QL +QQ HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256
>AY725820-1|AAU50568.1| 593|Anopheles gambiae fruitless
female-specific zinc-fingerC isoform protein.
Length = 593
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 159 EHAQLHVFSRQQSGGGHHYQ 100
EH QL +QQ HH Q
Sbjct: 189 EHEQLERLQQQQQQQTHHQQ 208
>AY725819-1|AAU50567.1| 569|Anopheles gambiae fruitless
male-specific zinc-fingerC isoform protein.
Length = 569
Score = 21.4 bits (43), Expect = 3.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 159 EHAQLHVFSRQQSGGGHHYQ 100
EH QL +QQ HH Q
Sbjct: 237 EHEQLERLQQQQQQQTHHQQ 256
>Y09951-1|CAA71082.1| 107|Anopheles gambiae histone H2a protein.
Length = 107
Score = 20.6 bits (41), Expect = 6.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 117 LQIVVGRIHEVVR 155
LQ VGRIH ++R
Sbjct: 8 LQFPVGRIHRLLR 20
>AB090816-1|BAC57907.1| 455|Anopheles gambiae gag-like protein
protein.
Length = 455
Score = 20.6 bits (41), Expect = 6.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 125 NLEVVIITNSDGDHDGYLEPNRRR 54
N+EV D DH ++E RR+
Sbjct: 148 NVEVQAQPEEDIDHSSFVEVVRRK 171
>AY705396-1|AAU12505.1| 710|Anopheles gambiae nicotinic
acetylcholine receptor subunitalpha 3 protein.
Length = 710
Score = 20.2 bits (40), Expect = 9.1
Identities = 7/25 (28%), Positives = 12/25 (48%)
Frame = -1
Query: 144 HVFSRQQSGGGHHYQFGRRSRWLFG 70
H+ + + GGG H+ S + G
Sbjct: 421 HLHNHRSGGGGRHHHHHHHSALVRG 445
>AY578812-1|AAT07317.1| 932|Anopheles gambiae wishful thinking
protein.
Length = 932
Score = 20.2 bits (40), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 209 SGCYKNGIMKTDAQSTSNTHN 147
+G YK G + + ++S TH+
Sbjct: 624 TGSYKYGKLSSSGGASSTTHS 644
>AY263175-1|AAP78790.1| 814|Anopheles gambiae TmcA-like protein
protein.
Length = 814
Score = 20.2 bits (40), Expect = 9.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 148 LCVFDVDWASVFIIP 192
LCV V +A VF+ P
Sbjct: 612 LCVLPVSYAIVFLEP 626
>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
differentiation regulator protein.
Length = 1283
Score = 20.2 bits (40), Expect = 9.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +2
Query: 53 GGGG*VPNSHRDR 91
GGGG HRDR
Sbjct: 228 GGGGGRDRDHRDR 240
>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
growth factor receptorprotein.
Length = 1433
Score = 20.2 bits (40), Expect = 9.1
Identities = 7/14 (50%), Positives = 8/14 (57%)
Frame = -1
Query: 63 PPPPKSCHLLLAXG 22
P P + CHL A G
Sbjct: 196 PKPRECCHLFCAGG 209
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,752
Number of Sequences: 2352
Number of extensions: 5526
Number of successful extensions: 19
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 49
effective length of database: 448,731
effective search space used: 9872082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
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