Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a01
         (216 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY169964-1|AAO11676.1|  513|Drosophila melanogaster NINAD protein.     29   1.2  
AY119140-1|AAM51000.1|  291|Drosophila melanogaster RE41741p pro...    29   1.2  
AE014134-2900|AAN11179.1|  513|Drosophila melanogaster CG31783-P...    29   1.2  
BT011041-1|AAR31112.1|  517|Drosophila melanogaster SD19826p pro...    28   1.5  
AY060663-1|AAL28211.1|  517|Drosophila melanogaster GH08870p pro...    28   1.5  
AE014297-4069|AAF56667.1|  517|Drosophila melanogaster CG6070-PA...    28   1.5  
AY089586-1|AAL90324.1|  434|Drosophila melanogaster RE12242p pro...    27   2.7  
AE014134-1913|AAF52971.1|  434|Drosophila melanogaster CG6113-PA...    27   2.7  
BT029586-1|ABL75645.1|  415|Drosophila melanogaster IP16932p pro...    27   3.6  
BT003533-1|AAO39537.1|  704|Drosophila melanogaster RE09535p pro...    27   3.6  
BT001800-1|AAN71555.1|  738|Drosophila melanogaster RH29074p pro...    27   3.6  
AE014134-1555|AAF52703.1|  666|Drosophila melanogaster CG9310-PC...    27   3.6  
AE014134-1554|AAN10680.1|  732|Drosophila melanogaster CG9310-PB...    27   3.6  
AE014134-1553|AAF52702.2|  704|Drosophila melanogaster CG9310-PA...    27   3.6  
DQ191320-1|ABB80265.1|  123|Drosophila melanogaster truncated p5...    26   6.2  
DQ191319-1|ABB80264.1|  495|Drosophila melanogaster p53 protein ...    26   6.2  
DQ191318-1|ABB80263.1|  495|Drosophila melanogaster p53 protein ...    26   6.2  
BT001357-1|AAN71112.1|  519|Drosophila melanogaster AT28346p pro...    26   6.2  
AE014297-3259|AAN13925.2|  495|Drosophila melanogaster CG33336-P...    26   6.2  

>AY169964-1|AAO11676.1|  513|Drosophila melanogaster NINAD protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 TIWRWSSLPIRTAITMAIWNLTAAAKIMS 41
           T  +W  LPI   + M +WN T AA + +
Sbjct: 53  TFEKWEELPIPVYVYMYLWNWTNAADVQA 81


>AY119140-1|AAM51000.1|  291|Drosophila melanogaster RE41741p
           protein.
          Length = 291

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 TIWRWSSLPIRTAITMAIWNLTAAAKIMS 41
           T  +W  LPI   + M +WN T AA + +
Sbjct: 53  TFEKWEELPIPVYVYMYLWNWTNAADVQA 81


>AE014134-2900|AAN11179.1|  513|Drosophila melanogaster CG31783-PA
           protein.
          Length = 513

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 127 TIWRWSSLPIRTAITMAIWNLTAAAKIMS 41
           T  +W  LPI   + M +WN T AA + +
Sbjct: 53  TFEKWEELPIPVYVYMYLWNWTNAADVQA 81


>BT011041-1|AAR31112.1|  517|Drosophila melanogaster SD19826p
           protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 136 LPTTIWRWSSLPIRTAITMAIWNLTAAAKIMSPF 35
           LP  ++ W ++ I    T AI  LT A+ ++ PF
Sbjct: 136 LPAFLYLWDAMMIFVPTTNAIMGLTFASYVLEPF 169


>AY060663-1|AAL28211.1|  517|Drosophila melanogaster GH08870p
           protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 136 LPTTIWRWSSLPIRTAITMAIWNLTAAAKIMSPF 35
           LP  ++ W ++ I    T AI  LT A+ ++ PF
Sbjct: 136 LPAFLYLWDAMMIFVPTTNAIMGLTFASYVLEPF 169


>AE014297-4069|AAF56667.1|  517|Drosophila melanogaster CG6070-PA
           protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 136 LPTTIWRWSSLPIRTAITMAIWNLTAAAKIMSPF 35
           LP  ++ W ++ I    T AI  LT A+ ++ PF
Sbjct: 136 LPAFLYLWDAMMIFVPTTNAIMGLTFASYVLEPF 169


>AY089586-1|AAL90324.1|  434|Drosophila melanogaster RE12242p
           protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 144 HVFSRQQSGGGHHYQFG-RRSRWLFGT*PPPPKSCHL 37
           H     +SGG   Y  G  R+ W++GT  PP  S HL
Sbjct: 325 HFGQLNRSGGFRQYDHGWLRNHWIYGTIDPP--SYHL 359


>AE014134-1913|AAF52971.1|  434|Drosophila melanogaster CG6113-PA
           protein.
          Length = 434

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 144 HVFSRQQSGGGHHYQFG-RRSRWLFGT*PPPPKSCHL 37
           H     +SGG   Y  G  R+ W++GT  PP  S HL
Sbjct: 325 HFGQLNRSGGFRQYDHGWLRNHWIYGTIDPP--SYHL 359


>BT029586-1|ABL75645.1|  415|Drosophila melanogaster IP16932p
           protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNL 120
           A S SN +N M+SP+NNL
Sbjct: 103 ASSGSNNNNSMFSPNNNL 120


>BT003533-1|AAO39537.1|  704|Drosophila melanogaster RE09535p
           protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNL 120
           A S SN +N M+SP+NNL
Sbjct: 99  ASSGSNNNNSMFSPNNNL 116


>BT001800-1|AAN71555.1|  738|Drosophila melanogaster RH29074p
           protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNL 120
           A S SN +N M+SP+NNL
Sbjct: 133 ASSGSNNNNSMFSPNNNL 150


>AE014134-1555|AAF52703.1|  666|Drosophila melanogaster CG9310-PC,
           isoform C protein.
          Length = 666

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNL 120
           A S SN +N M+SP+NNL
Sbjct: 61  ASSGSNNNNSMFSPNNNL 78


>AE014134-1554|AAN10680.1|  732|Drosophila melanogaster CG9310-PB,
           isoform B protein.
          Length = 732

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNL 120
           A S SN +N M+SP+NNL
Sbjct: 127 ASSGSNNNNSMFSPNNNL 144


>AE014134-1553|AAF52702.2|  704|Drosophila melanogaster CG9310-PA,
           isoform A protein.
          Length = 704

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNL 120
           A S SN +N M+SP+NNL
Sbjct: 99  ASSGSNNNNSMFSPNNNL 116


>DQ191320-1|ABB80265.1|  123|Drosophila melanogaster truncated p53
           splice variant isoformprotein.
          Length = 123

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 84
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


>DQ191319-1|ABB80264.1|  495|Drosophila melanogaster p53 protein
           long form variant 2 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 84
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


>DQ191318-1|ABB80263.1|  495|Drosophila melanogaster p53 protein
           long form variant 1 protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 84
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


>BT001357-1|AAN71112.1|  519|Drosophila melanogaster AT28346p
           protein.
          Length = 519

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 84
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 106 AYGGNNTNNMMQFT-NNLEILANNNSDGNN 134


>AE014297-3259|AAN13925.2|  495|Drosophila melanogaster CG33336-PB,
           isoform B protein.
          Length = 495

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 173 AQSTSNTHNFMYSPDNNLEVVIITNSDGDH 84
           A   +NT+N M    NNLE++   NSDG++
Sbjct: 82  AYGGNNTNNMMQFT-NNLEILANNNSDGNN 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,177,923
Number of Sequences: 53049
Number of extensions: 252841
Number of successful extensions: 627
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 24,988,368
effective HSP length: 51
effective length of database: 22,282,869
effective search space used: 445657380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)