Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc11a01
(216 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical p... 29 0.34
U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical p... 29 0.34
AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical ... 27 2.4
AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical ... 27 2.4
AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm rec... 26 3.2
Z69634-7|CAA93453.2| 248|Caenorhabditis elegans Hypothetical pr... 26 4.2
U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid tran... 26 4.2
U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 25 5.5
U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppress... 25 5.5
U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein. 25 5.5
S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein. 25 5.5
Z75532-1|CAA99809.1| 93|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical pr... 25 7.3
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 25 7.3
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 25 7.3
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 25 7.3
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 25 7.3
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 25 7.3
AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode ast... 25 7.3
Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical p... 25 9.7
Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical p... 25 9.7
U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical pr... 25 9.7
U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical p... 25 9.7
U10438-4|AAA19085.2| 344|Caenorhabditis elegans Hypothetical pr... 25 9.7
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 25 9.7
AF036698-1|AAB88352.1| 425|Caenorhabditis elegans Hypothetical ... 25 9.7
AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical ... 25 9.7
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 25 9.7
>U53181-11|AAM29689.1| 315|Caenorhabditis elegans Hypothetical
protein F36D4.5b protein.
Length = 315
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 189 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 97
DY + V I H+ + VF + + GGH YQF
Sbjct: 25 DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 55
>U53181-10|AAA93489.2| 334|Caenorhabditis elegans Hypothetical
protein F36D4.5a protein.
Length = 334
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 189 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQF 97
DY + V I H+ + VF + + GGH YQF
Sbjct: 44 DYASNIGVGIFHSGIEVFGVEYAYGGHPYQF 74
>AL110478-6|CAE17957.2| 952|Caenorhabditis elegans Hypothetical
protein Y26D4A.14 protein.
Length = 952
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -2
Query: 200 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDH---DGYLEPNRR 57
++NG+ K D + T NFM + +++ T+ + + ++PN++
Sbjct: 786 FENGLSKKDIRHCFQTQNFMVDKKDKSNILVTTSDNCEEIPDPSSIDPNKK 836
>AC006757-3|AAF60541.2| 916|Caenorhabditis elegans Hypothetical
protein Y40C7B.1 protein.
Length = 916
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 200 YKNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITN---SDGDHDGYLEPNRR 57
++NG+ K D + T NFM + +++ T+ D ++PN++
Sbjct: 750 FENGLSKRDIRHCFQTQNFMVDKKDKSNILVTTSENCEDIPDPSSIDPNKK 800
>AC006680-10|AAK72297.2| 335|Caenorhabditis elegans Seven tm
receptor protein 41 protein.
Length = 335
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 146 FMYSPDNNLEVVIITNSDGDHDGYL 72
F+Y N+L ++ +T+ DG D YL
Sbjct: 143 FLYGVVNSLSILFLTSPDGFTDDYL 167
>Z69634-7|CAA93453.2| 248|Caenorhabditis elegans Hypothetical
protein B0001.4 protein.
Length = 248
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -1
Query: 183 ENGRPVDIEHAQLHVFSRQQS 121
++GR +DI H LH F R+ S
Sbjct: 38 QSGRQIDIVHLSLHSFYRELS 58
>U50308-4|AAG24030.2| 483|Caenorhabditis elegans Amino acid
transporter protein 2 protein.
Length = 483
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 136 LPTTIWRWSSLPIRTAITMAIWNLTAAAKIMSPFIS 29
LP+ ++ W +L I ++AI +T A + PF S
Sbjct: 96 LPSFLFLWVALVIINPTSLAIIAITCATYALQPFYS 131
>U23527-3|AAC46573.3| 596|Caenorhabditis elegans Hypothetical
protein K09E2.2 protein.
Length = 596
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -2
Query: 179 TDAQSTSNTHNFMYSPDNNLEV 114
TD +S + H+++ P+NNL +
Sbjct: 44 TDEKSANTVHSYVLDPENNLSL 65
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 25.4 bits (53), Expect = 5.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 6 STRSNRRLLIKGDMILAAAVRFQIAIVI 89
S R +RRLL+KGD A + +F I I
Sbjct: 836 SIRVDRRLLVKGDKNYAGSQKFFAPICI 863
>U39853-2|AAK39225.1| 771|Caenorhabditis elegans Kinase suppressor
of activatedras protein 1 protein.
Length = 771
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 140 YSPDNNLEVVIITNSDGDHDGYLEPNRRRQNH 45
YS N L +++I S+GDH E + +NH
Sbjct: 361 YSVHNRLPILVI--SEGDHPTTTEIQQETENH 390
>U38820-1|AAA92436.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 140 YSPDNNLEVVIITNSDGDHDGYLEPNRRRQNH 45
YS N L +++I S+GDH E + +NH
Sbjct: 361 YSVHNRLPILVI--SEGDHPTTTEIQQETENH 390
>S80647-1|AAB35769.1| 771|Caenorhabditis elegans KSR-1 protein.
Length = 771
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 140 YSPDNNLEVVIITNSDGDHDGYLEPNRRRQNH 45
YS N L +++I S+GDH E + +NH
Sbjct: 361 YSVHNRLPILVI--SEGDHPTTTEIQQETENH 390
>Z75532-1|CAA99809.1| 93|Caenorhabditis elegans Hypothetical
protein C54G10.1 protein.
Length = 93
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 180 NGRPVDIEHAQLHVFSRQQSGGGHHYQ 100
N P + HA+L +Q GGHH Q
Sbjct: 11 NYAPDQVIHARLLFMRMEQVPGGHHLQ 37
>Z68217-2|CAA92470.2| 134|Caenorhabditis elegans Hypothetical
protein F58G6.3 protein.
Length = 134
Score = 25.0 bits (52), Expect = 7.3
Identities = 7/27 (25%), Positives = 15/27 (55%)
Frame = -3
Query: 124 IWRWSSLPIRTAITMAIWNLTAAAKIM 44
+W W + + + WN+T+A K++
Sbjct: 16 MWMWFHTKPQDTVLFSTWNITSAGKMV 42
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 194 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 233 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 270
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 194 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 229 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 266
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 194 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 233 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 270
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 194 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 229 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 266
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 194 NGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSDGDHD 81
NG D ++S+ + Y+P+N + +T+SD D D
Sbjct: 233 NGAPPHDYVTSSHFASSSYNPENMFDDDDLTDSDDDRD 270
>AC024877-13|AAF60901.2| 710|Caenorhabditis elegans Nematode
astacin protease protein30 protein.
Length = 710
Score = 25.0 bits (52), Expect = 7.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 105 YQFGRRSRWLFGT*PPPP 52
Y+ + +W+ GT PPPP
Sbjct: 564 YEVSYKLQWIQGTPPPPP 581
>Z93389-10|CAB07674.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 105 NDDHLQIVVGRIHEVVRVRCRLGVRFHNPVFI 200
N D+ + +H +V CR G FH P +
Sbjct: 331 NADYFPSRIKVMHSLVYALCRAGYTFHVPTHV 362
>Z93379-11|CAB07595.1| 417|Caenorhabditis elegans Hypothetical
protein F21H7.10 protein.
Length = 417
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +3
Query: 105 NDDHLQIVVGRIHEVVRVRCRLGVRFHNPVFI 200
N D+ + +H +V CR G FH P +
Sbjct: 331 NADYFPSRIKVMHSLVYALCRAGYTFHVPTHV 362
>U40940-5|AAA81706.2| 465|Caenorhabditis elegans Hypothetical
protein T03G6.3 protein.
Length = 465
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -1
Query: 189 DYENGRPVDIEHAQLHVFSRQQSGGGHHYQFGRRSRW 79
DY + V H+ + VF+ + G HY+F W
Sbjct: 266 DYSLVKKVVNSHSMIMVFTNPEDEGTVHYEFSVCEVW 302
>U29535-11|AAK31456.1| 947|Caenorhabditis elegans Hypothetical
protein C25H3.11 protein.
Length = 947
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 170 QSTSNTHNFMYSPDNNLEVVIITNSDG 90
QST +T + +P N L VV +T S+G
Sbjct: 382 QSTVSTDDSNTNPSNALAVVPVTTSNG 408
>U10438-4|AAA19085.2| 344|Caenorhabditis elegans Hypothetical
protein B0280.7 protein.
Length = 344
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 143 MYSPDNNLEVVIITNSDGDHDGYLEPNR 60
+Y DN+LE I S+GD G +E N+
Sbjct: 298 VYICDNSLEEFKIVESNGDDLGPVEENK 325
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -1
Query: 63 PPPPKSCHL 37
PPPP+SCH+
Sbjct: 432 PPPPESCHV 440
>AF036698-1|AAB88352.1| 425|Caenorhabditis elegans Hypothetical
protein B0273.3 protein.
Length = 425
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 174 RPVDIEHAQLHVFSRQQSGGGHHYQFGRRS 85
R +D+ H VF+R+ GG + G ++
Sbjct: 64 RQIDVSHISSMVFNREMDGGIERNRLGSQA 93
>AC024794-6|AAK68493.2| 425|Caenorhabditis elegans Hypothetical
protein Y48G1BM.1 protein.
Length = 425
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 174 RPVDIEHAQLHVFSRQQSGGGHHYQFGRRS 85
R +D+ H VF+R+ GG + G ++
Sbjct: 64 RQIDVSHISSMVFNREMDGGIERNRLGSQA 93
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/9 (77%), Positives = 9/9 (100%)
Frame = -1
Query: 63 PPPPKSCHL 37
PPPP+SCH+
Sbjct: 432 PPPPESCHV 440
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,898,507
Number of Sequences: 27780
Number of extensions: 115366
Number of successful extensions: 283
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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