Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc11a01
         (216 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   0.31 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   1.7  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           20   2.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           20   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   5.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   8.8  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         19   8.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    19   8.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    19   8.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    19   8.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    19   8.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 0.31
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 197 KNGIMKTDAQSTSNTHNFMYSPDNNLEVVIITNSD 93
           K  ++    Q+  +T+  +Y  DN   ++I  N+D
Sbjct: 184 KGELVSLTVQAMDSTNTMVYMVDNKNTLIIYQNAD 218


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 1.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 197 KNGIMKTDAQSTSNTHNFMYSPDNNLEVV 111
           +NGI   D  +  N + F+   +NN  +V
Sbjct: 318 RNGIACWDTNTELNPNTFILVAENNTTMV 346


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 135 SRQQSGGGHHYQFGRRSRWLFGT*PPPPK 49
           S   S  GH    GRR R+ F   P  P+
Sbjct: 40  SASNSVHGHREGLGRRHRYNFQLKPYNPE 68


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 135 SRQQSGGGHHYQFGRRSRWLFGT*PPPPK 49
           S   S  GH    GRR R+ F   P  P+
Sbjct: 41  SASNSVHGHREGLGRRHRYNFQLKPYNPE 69


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 123 SGGGHHYQFGRR 88
           SGG +H+  GRR
Sbjct: 264 SGGTNHWDSGRR 275


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 131 DNNLEVVIITNSDGDHDGYLE 69
           D N EV + T +   H G +E
Sbjct: 122 DGNFEVTLATKATIYHQGLVE 142


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 112 TTSRLLSGEYMKLCVFDV--DWASVFII 189
           T SR +SG   +  +FDV  ++ S++ +
Sbjct: 346 TKSRFISGIRSEQTIFDVKPEFGSIYFL 373



 Score = 18.6 bits (36), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 88  SPSELVMMTTSRLLSGEYMKLCVFDVD 168
           SP+     TTS  +S +++K+ V + D
Sbjct: 385 SPTTEPSTTTSTTISQKHIKVFVVNKD 411


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 159 EHAQLHVFSRQQSGGGHH 106
           +HA   ++  QQS  G H
Sbjct: 797 QHAAQMIYGHQQSHHGLH 814


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 189 DYENGRPVDIEHAQLHVF 136
           DY+N  P DI+     +F
Sbjct: 60  DYKNNYPSDIDQWHDKIF 77


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 131 DNNLEVVIITNSDGDHDG 78
           D N EV I+T +   H G
Sbjct: 114 DGNYEVTIMTKAILHHTG 131


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 176 DAQSTSNTHNFMYSPDN 126
           D+Q++++T+N   S D+
Sbjct: 82  DSQNSASTYNSFLSSDS 98


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 189 DYENGRPVDIEHAQLHVF 136
           DY+N  P DI+     +F
Sbjct: 60  DYKNNYPSDIDQWHDKIF 77


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 18.6 bits (36), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 189 DYENGRPVDIEHAQLHVF 136
           DY+N  P DI+     +F
Sbjct: 60  DYKNNYPSDIDQWHDKIF 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,219
Number of Sequences: 438
Number of extensions: 1493
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3154875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)