Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p23
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    27   4.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   7.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   9.4  

>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 101 NIFKVYIDFMLVHLVSLXYYSCTRFPVNM 15
           N+F+ +I+ M  H++ L YY   R P+ +
Sbjct: 127 NVFRRFINLMPEHVIPLEYYERFREPMTI 155


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -3

Query: 452 YSYKLXRIYXFLYFNN*SWFMFFWYIL 372
           + Y+  R+Y F + +N +W + F+ IL
Sbjct: 186 FMYEFERLYAFGFHSNNAWLISFYSIL 212


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 95  FKVYIDFMLVHLVSLXYYSCTRFPVNMI 12
           F++Y +  L H   L YY   +FP N I
Sbjct: 350 FRMYDNDQLGHDYFLKYYKAAKFPTNNI 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,206
Number of Sequences: 5004
Number of extensions: 27398
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)