Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p23
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47068-5|CAA87333.1|  162|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>Z47068-5|CAA87333.1|  162|Caenorhabditis elegans Hypothetical
           protein F15G9.3 protein.
          Length = 162

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 458 RYYSYKLXRIYXFLYFNN*SWFMFFW-YILFS 366
           RYY  K  + Y FL F+N   F  FW YI+FS
Sbjct: 8   RYYQLKKQKPYIFLKFSN---FQLFWSYIMFS 36


>Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical
           protein T19C4.3 protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -3

Query: 125 IFLYPXXVNIFKVYIDFMLVHLVSLXYYSCTRFPVNM 15
           +F+Y   +N+F  ++   ++ L S+  + C   PV M
Sbjct: 43  LFVYDGFMNLFTYFVGLFMLRLTSITCFDCLMVPVYM 79


>Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical
           protein F15H9.4 protein.
          Length = 314

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 424 GSYILIISHGLCSSGIFCLANXNY 353
           GS   + SH +CSS +  L+N  Y
Sbjct: 278 GSMFFVASHSMCSSAVMILSNPRY 301


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,422,341
Number of Sequences: 27780
Number of extensions: 142242
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)