Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p22
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0643 - 10090720-10091007,10091121-10091228,10091314-100914... 157 1e-38
06_01_1075 - 8770120-8770371,8770684-8770770,8770866-8770946,877... 144 9e-35
12_02_0861 - 23763927-23764034,23764140-23764196,23764624-237647... 33 0.35
04_03_0811 - 19909128-19912214 30 1.9
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583... 29 4.3
07_01_0117 + 894314-896677 28 9.9
03_05_0101 - 20803546-20803800,20803907-20804700,20804788-208050... 28 9.9
>03_02_0643 -
10090720-10091007,10091121-10091228,10091314-10091400,
10091488-10091568,10091669-10091803,10091919-10092140,
10092377-10092457,10092565-10092726,10092851-10093041,
10093190-10093331,10093449-10093547,10093668-10093806,
10094355-10094392
Length = 590
Score = 157 bits (381), Expect = 1e-38
Identities = 92/240 (38%), Positives = 141/240 (58%), Gaps = 7/240 (2%)
Frame = -3
Query: 758 EVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELA 579
E F D ++ VIYH E+YD+TTIRAS PM+L+++ IK +V SGEG+DEL
Sbjct: 278 EFHFTVQDGIDAIEEVIYHDETYDVTTIRASTPMFLMARKIKA-LGVKMVLSGEGSDELL 336
Query: 578 QGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLS 399
GY+YF AP++++ HKE+ R + ++ YD LRA++ TSA+ LE+RVPFLD +F + +S
Sbjct: 337 GGYLYFHFAPNKEEFHKETCRKVKALHQYDCLRANKATSAWGLEVRVPFLDKEFINVAMS 396
Query: 398 IPP--KLRQPQNG-VEKHLLRSSF--AKSGLLPDCVLWRHKEAFSDGV--SSVKKSLFSV 240
+ P K+ G +EK ++R +F + LP +L+R KE FSDGV + +
Sbjct: 397 MDPEWKMYNADLGRIEKWVMRKAFDDEEHPYLPKHILYRQKEQFSDGVGYNWIDGLKAFT 456
Query: 239 IKEITTERLQEDDIQYPGLQPKTNESKYYRYVFEKSFPGQHNFTPYYWMPKWVQVSDPSA 60
++++ E ++ YP P E+ YYR +FE+ FP + W P + S P+A
Sbjct: 457 EQQVSDEMMKNAAKVYPHNTPVNKEAYYYRMIFERLFPQESARETVPWGPS-IACSTPAA 515
>06_01_1075 -
8770120-8770371,8770684-8770770,8770866-8770946,
8771043-8771177,8771363-8771584,8771676-8771756,
8771954-8772115,8772991-8773106,8774333-8774474,
8774592-8774687,8774987-8775125,8776297-8776376
Length = 530
Score = 144 bits (348), Expect = 9e-35
Identities = 74/168 (44%), Positives = 113/168 (67%), Gaps = 5/168 (2%)
Frame = -3
Query: 758 EVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELA 579
E+ F + L+ VIYH+E+YD+TTIRAS PM+L+S+ IK +V SGEG+DE+
Sbjct: 266 ELHFTVQEGIDALEEVIYHVETYDVTTIRASTPMFLMSRKIKS-LGVKMVLSGEGSDEIF 324
Query: 578 QGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLS 399
GY+YF AP++K+ H+E+ R + ++LYD LRA+++TSA+ +E RVPFLD F + +
Sbjct: 325 GGYLYFHKAPNKKEFHEETCRKIKALHLYDCLRANKSTSAWGVEARVPFLDKNFINVAMD 384
Query: 398 IPPK---LRQPQNGVEKHLLRSSF--AKSGLLPDCVLWRHKEAFSDGV 270
I P+ +++ +EK +LR++F + LP +L+R KE FSDGV
Sbjct: 385 IDPEWKMIKRDLGRIEKWVLRNAFDDEEKPYLPKHILYRQKEQFSDGV 432
>12_02_0861 -
23763927-23764034,23764140-23764196,23764624-23764740,
23764825-23764924,23765049-23765239,23765328-23765421,
23765918-23766023,23766223-23766337,23766487-23766554,
23766724-23767047,23767444-23767647,23767910-23768059,
23768151-23768256,23768383-23768490
Length = 615
Score = 32.7 bits (71), Expect = 0.35
Identities = 34/104 (32%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Frame = -3
Query: 635 KEKTDTTVVFSGEGADELAQGYIYFRDAPSEKD--AHKESVRL-LSDIYLYDGLRADRTT 465
K K+ + V+ G GADE GY R E +RL + I+ + R DR
Sbjct: 457 KYKSTSRVLLVGSGADEQCAGYGRHRTKYRLGGWVLLDEEMRLDVQRIWKRNMGRDDRCI 516
Query: 464 SAFSLELRVPFLDIQFTHHYLSIP----PKLRQPQNGVEKHLLR 345
S E R PFLD L IP KL +P +K +LR
Sbjct: 517 SDHGKEARFPFLDENVIKTLLEIPLWDIAKLDEPVGKGDKKILR 560
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = -3
Query: 638 IKEKTDTTVVFS-GEGADELAQGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTS 462
+K++ + T FS G D + Y+++ AP +A +S R L + + L TTS
Sbjct: 25 LKQRMEETNYFSWGVSGDNEMREYLFWEMAP-RINATLDSKRYL---LVVENLYKPITTS 80
Query: 461 AFSLELRVP 435
AF+ ELR+P
Sbjct: 81 AFTTELRLP 89
>03_05_0712 -
27057858-27057941,27058093-27058182,27058268-27058384,
27059759-27059866,27060314-27060406,27060499-27060669,
27061505-27061757,27061860-27062138,27062939-27063273,
27063364-27064332,27064711-27065182,27065243-27065291,
27066564-27066804,27067606-27067695,27068172-27068294,
27068365-27068418
Length = 1175
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 421 NSLITIFQYLLNYDNPKTALRNIC*EVVLQKVDYCQTVCCGD 296
NS+ F+ +LN N A +N+C V + C CC D
Sbjct: 153 NSISACFKIILNSINSMDASKNLCSFAVGTPEERCNHSCCKD 194
>07_01_0117 + 894314-896677
Length = 787
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 99 IVRSKIMLSWK*FLKYVAVIFGFIRFRLQSWILYIVFL 212
+VR ++M FL + AV FG R WI+ VFL
Sbjct: 26 VVRIEVMAMVAIFLTFYAVTFGSCRRWSSRWIIQKVFL 63
>03_05_0101 -
20803546-20803800,20803907-20804700,20804788-20805042,
20805143-20805263,20805716-20805768,20805979-20806239,
20806734-20806784,20806900-20807148,20807257-20807479,
20807737-20807910
Length = 811
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 710 IYHLESYDITTIRASLPMYLLSKYIKEKTD 621
IY L YD+ +RA P Y++ + + K D
Sbjct: 277 IYDLVKYDVGVLRAFNPKYIIDYFRRNKKD 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,123,909
Number of Sequences: 37544
Number of extensions: 398019
Number of successful extensions: 939
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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