Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p22
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical pr... 179 2e-45
U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical pr... 177 7e-45
AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl t... 144 6e-35
L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical pr... 34 0.14
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 32 0.41
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 32 0.41
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 32 0.41
AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate s... 30 2.2
AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical... 30 2.2
Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical pr... 28 8.9
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 28 8.9
>U41034-5|AAA82381.1| 567|Caenorhabditis elegans Hypothetical protein
M02D8.4a protein.
Length = 567
Score = 179 bits (436), Expect = 2e-45
Identities = 102/244 (41%), Positives = 144/244 (59%), Gaps = 10/244 (4%)
Frame = -3
Query: 758 EVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELA 579
E F + K+L +I+HLESYD+T+IRAS PMY LS+ I+ K VV SGEGADE+
Sbjct: 290 EFYFSIEEGIKNLRKLIWHLESYDVTSIRASTPMYFLSEEIR-KLGIKVVLSGEGADEIF 348
Query: 578 QGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLS 399
GY+YF +APS++D KE++ + +Y D LRAD+++ A S+E+RVPFLD F +S
Sbjct: 349 GGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSVEVRVPFLDKAFVEAAVS 408
Query: 398 IPPKLRQPQ-----NGVEKHLLRSSF--AKSGLLPDCVLWRHKEAFSDGV--SSVKKSLF 246
+ P ++PQ EK +LRS+F + LPD +LWR KE FSDGV S + +
Sbjct: 409 LDPAFKRPQKLEDGRNCEKFVLRSAFNTDQYPYLPDEILWRQKEQFSDGVGYSWIDTLMK 468
Query: 245 SVIKEITTERLQEDDIQYPGLQPKTNESKYYRYVFEKSFPG-QHNFTPYYWMPKWVQVSD 69
+IT + + +P P + E+ Y R +F + FP Q T W+PKW + D
Sbjct: 469 YCAAKITDKEFSQASKLFPHNTPHSKEAFYMRKIFHEQFPSEQAALTVRKWIPKWQKNQD 528
Query: 68 PSAR 57
PS R
Sbjct: 529 PSGR 532
>U41034-6|AAU05557.1| 538|Caenorhabditis elegans Hypothetical protein
M02D8.4c protein.
Length = 538
Score = 177 bits (431), Expect = 7e-45
Identities = 101/242 (41%), Positives = 143/242 (59%), Gaps = 10/242 (4%)
Frame = -3
Query: 758 EVQFDENDIRKDLDNVIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELA 579
E F + K+L +I+HLESYD+T+IRAS PMY LS+ I+ K VV SGEGADE+
Sbjct: 290 EFYFSIEEGIKNLRKLIWHLESYDVTSIRASTPMYFLSEEIR-KLGIKVVLSGEGADEIF 348
Query: 578 QGYIYFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLS 399
GY+YF +APS++D KE++ + +Y D LRAD+++ A S+E+RVPFLD F +S
Sbjct: 349 GGYLYFHNAPSDEDFQKETIDRVLHLYTSDCLRADKSSMAHSVEVRVPFLDKAFVEAAVS 408
Query: 398 IPPKLRQPQ-----NGVEKHLLRSSF--AKSGLLPDCVLWRHKEAFSDGV--SSVKKSLF 246
+ P ++PQ EK +LRS+F + LPD +LWR KE FSDGV S + +
Sbjct: 409 LDPAFKRPQKLEDGRNCEKFVLRSAFNTDQYPYLPDEILWRQKEQFSDGVGYSWIDTLMK 468
Query: 245 SVIKEITTERLQEDDIQYPGLQPKTNESKYYRYVFEKSFPG-QHNFTPYYWMPKWVQVSD 69
+IT + + +P P + E+ Y R +F + FP Q T W+PKW + D
Sbjct: 469 YCAAKITDKEFSQASKLFPHNTPHSKEAFYMRKIFHEQFPSEQAALTVRKWIPKWQKNQD 528
Query: 68 PS 63
PS
Sbjct: 529 PS 530
>AF022973-3|AAC25799.1| 551|Caenorhabditis elegans Asparaginyl trna
synthetase protein2 protein.
Length = 551
Score = 144 bits (349), Expect = 6e-35
Identities = 78/201 (38%), Positives = 117/201 (58%), Gaps = 3/201 (1%)
Frame = -3
Query: 722 LDNVIYHLESYDITTIRASLPMYLLSKYIKEKTDTTVVFSGEGADELAQGYIYFRDAPSE 543
+ V++ LE++D IR + YLL ++I + +D V+ SGEGADEL Y Y + AP+
Sbjct: 297 IPEVVFALETFDPLIIRCGIAHYLLCQHISKSSDVKVLLSGEGADELFGSYAYMQRAPNA 356
Query: 542 KDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPKLRQPQNGV 363
HKE +R + ++ YD LR DR+TS LE+RVPFLD +F +PP + +
Sbjct: 357 LHLHKEILRRMHHLHQYDVLRCDRSTSCHGLEIRVPFLDKRFIDLVSRLPPSYKLMPMKL 416
Query: 362 EKHLLRSSFAKSGLLPDCVLWRHKEAFSD--GVSSVKKSLFSVIKEITTERLQEDDIQ-Y 192
EKH+LRS+F G LPD VLWR KE F++ G + + L ++ ++ L E + +
Sbjct: 417 EKHVLRSAF--EGWLPDEVLWRSKEGFAEALGKTDLGDILAEHCDKLISKSLYERRAERF 474
Query: 191 PGLQPKTNESKYYRYVFEKSF 129
P P+T E +YR +FE +F
Sbjct: 475 PDRTPETTEEYWYRQIFEDTF 495
>L16559-6|AAA27931.1| 397|Caenorhabditis elegans Hypothetical
protein C06E1.8 protein.
Length = 397
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -1
Query: 667 VCQCTFCQSILKKKQTQQWYLAEKEPMN*RKAISTSE---THRLKRTHIKRAYVC 512
+C FC S + Q + + RK IS+SE TH K+ HI R Y+C
Sbjct: 55 ICSKVFCHSSSLSRHRMQAHFKSYKCTVCRKDISSSESLRTHMFKQHHISRMYMC 109
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 566 YFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPK 387
Y RD +E + ++ +R SD L RAD+ ++F+ + DI +TH +PP
Sbjct: 1348 YRRDPLTEPPSMEDCIRAHSDPNLPPHPRADQYPASFTRPMVEYCEDIYWTHRTGQLPPG 1407
Query: 386 LRQPQ 372
L+ P+
Sbjct: 1408 LQVPR 1412
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 566 YFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPK 387
Y RD +E + ++ +R SD L RAD+ ++F+ + DI +TH +PP
Sbjct: 1348 YRRDPLTEPPSMEDCIRAHSDPNLPPHPRADQYPASFTRPMVEYCEDIYWTHRTGQLPPG 1407
Query: 386 LRQPQ 372
L+ P+
Sbjct: 1408 LQVPR 1412
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = -3
Query: 566 YFRDAPSEKDAHKESVRLLSDIYLYDGLRADRTTSAFSLELRVPFLDIQFTHHYLSIPPK 387
Y RD +E + ++ +R SD L RAD+ ++F+ + DI +TH +PP
Sbjct: 1348 YRRDPLTEPPSMEDCIRAHSDPNLPPHPRADQYPASFTRPMVEYCEDIYWTHRTGQLPPG 1407
Query: 386 LRQPQ 372
L+ P+
Sbjct: 1408 LQVPR 1412
>AF099673-1|AAC97508.1| 315|Caenorhabditis elegans thymidylate
synthase protein.
Length = 315
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = -3
Query: 782 RII*ERNIEVQFDENDIRKDLDNVIY-HLESYDITTIRASLPMYLLSKYIKEKTDTTVVF 606
+++ E+N+++ +++N R LDN+ + E D+ + + +KY+ TD +
Sbjct: 101 KLLMEKNVKI-WEKNGDRAFLDNLGFTSREEGDLGPVYGFQWRHFGAKYVDCHTD----Y 155
Query: 605 SGEGADELAQGYIYFRDAPSEK 540
SG+G D+LA+ ++ P +
Sbjct: 156 SGQGVDQLAEVIRQIKEQPDSR 177
>AC006708-20|AAF60422.1| 312|Caenorhabditis elegans Hypothetical
protein Y110A7A.4 protein.
Length = 312
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = -3
Query: 782 RII*ERNIEVQFDENDIRKDLDNVIY-HLESYDITTIRASLPMYLLSKYIKEKTDTTVVF 606
+++ E+N+++ +++N R LDN+ + E D+ + + +KY+ TD +
Sbjct: 98 KLLMEKNVKI-WEKNGDRAFLDNLGFTSREEGDLGPVYGFQWRHFGAKYVDCHTD----Y 152
Query: 605 SGEGADELAQGYIYFRDAPSEK 540
SG+G D+LA+ ++ P +
Sbjct: 153 SGQGVDQLAEVIRQIKEQPDSR 174
>Z70036-5|CAO78725.1| 712|Caenorhabditis elegans Hypothetical
protein T01B4.2c protein.
Length = 712
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 674 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 588
+ S M LL KYI++K +V+FS + AD
Sbjct: 17 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 45
>Z70036-4|CAO78724.1| 733|Caenorhabditis elegans Hypothetical
protein T01B4.2b protein.
Length = 733
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 674 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 588
+ S M LL KYI++K +V+FS + AD
Sbjct: 38 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 66
>Z70036-3|CAA93876.1| 757|Caenorhabditis elegans Hypothetical
protein T01B4.2a protein.
Length = 757
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 674 RASLPMYLLSKYIKEKTDTTVVFSGEGAD 588
+ S M LL KYI++K +V+FS + AD
Sbjct: 62 QTSQAMKLLEKYIRKKYRHSVIFSQDSAD 90
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 199 ISSSCNLSVVISFMTENNDFLTEDTPSLNASLCRHSTQSGNNPL 330
+SSSC S+ I + E DF T T + LC +S +P+
Sbjct: 275 LSSSCQASIEIDSLFEGIDFYTNITRARFEELCADLFRSTMDPV 318
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,110,129
Number of Sequences: 27780
Number of extensions: 387648
Number of successful extensions: 1160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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