Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p16
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    71   1e-13
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.3  
SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   10.0 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   10.0 
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   10.0 

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
 Frame = -3

Query: 237 AEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISL 64
           A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPGKKGI+L
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIAL 72

Query: 63  TPEQWRKLLSVGEEVNETV 7
              +W+KL  +  EV++++
Sbjct: 73  NINEWKKLKQLIHEVDDSL 91


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 79  FTW*KFTILFIKFSYVYIYFSFEFS 153
           + W K   +F+KFS + + FS  FS
Sbjct: 49  YQWFKHQSVFLKFSLIVLLFSLMFS 73


>SPAPB1E7.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = -3

Query: 216 ADRTNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELLPGKKGISLTPEQWRKLL 37
           A R +  E +WV    + LK      K  ++ +   +K  E + G K         RKL 
Sbjct: 58  ASRKDQSENSWVTSKNEKLKSLPPALKKKIERQLQKKKEAEKIEGGKNHDNLK---RKLN 114

Query: 36  SVGEEVNETVS 4
            VG+E+NE  S
Sbjct: 115 KVGDELNEQQS 125


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 8   TVSLTSSPTDNNFLHCSGVRLI---PFLPGKSSPFFS*NSLMSTYTFPLNSRTFSN 166
           T S +  P+ +  +  S   ++   P     SSP  S +SL+STY+  L++ T S+
Sbjct: 665 TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSS 720


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 59  GVRLIPFLPGKSSPFFS*NSLMSTYTFPLNS--RTFSNFLPCNTHVGSLSL 205
           G+ + P  PG+ +PF     +++ YT  + S     S  L   +H+G++ L
Sbjct: 341 GMSVCPLYPGEENPFKRFKIMLTVYTGKVISVEVQLSENLYDTSHIGNIPL 391


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 419  HINSTLWYCRLSLVRL 372
            HINS + YCRL+  R+
Sbjct: 1554 HINSWIGYCRLTRTRI 1569


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 287 IVLVVTVMTALKIGTLLLKKRQKWQTGL 204
           ++++V+ +T ++   L+LKK   W+  L
Sbjct: 733 VIILVSKITGVQSPPLILKKHDNWKVSL 760


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,541
Number of Sequences: 5004
Number of extensions: 30327
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)