Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p14
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.84
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 2.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 2.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 27 3.4
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 27 4.5
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.9
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 5.9
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 5.9
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 7.8
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 29.1 bits (62), Expect = 0.84
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = -2
Query: 451 HNDCYVAVCVLKPGFENGSNQVLSFEYNPIGNKVI--VPFAHEINDT--GLYEYDVLAYV 284
H + A+ + + +N + P N +I V N+T GL+++ + A+
Sbjct: 441 HRGNWAAIATMSLQLPSTANSISFLSSPPNNNDIIDKVICVSYANNTILGLFDFGLCAFT 500
Query: 283 DSVEFDGKQFEEFVQKLILPSSFNDSEKVL 194
+EF ++ + +Q+L+ +FN+S ++
Sbjct: 501 QEIEFSNEKEKSPIQQLL---TFNNSNMIV 527
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 661 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKS 545
FD+ E + + GFHD YF + + QN ++ KS
Sbjct: 17 FDEANDEAYESV-GFHDYADYFSRKQRKLQNQNAALYKS 54
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/78 (20%), Positives = 39/78 (50%)
Frame = -2
Query: 673 VDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSI 494
+D+Q ++ R+Y + +++ + Y V+ +G+ + + S +D+K +
Sbjct: 877 IDDQLIEVARDYHPL---WATSVEILSERKYFVTEADGNAVILLRDNV--SPQLSDRKKL 931
Query: 493 ETYEKYCLPQLVDKHNDC 440
Y+K+ L +L++K C
Sbjct: 932 RWYKKFYLGELINKTRHC 949
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 355 CYQSGCTQKIA--LGCCRSQIPASTRIPPRSS 444
C S C KIA L CR P S+ +PP SS
Sbjct: 338 CAFSQCLSKIADWLRSCRLTKPESSSVPPSSS 369
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 424 VLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSVEFD 266
VL P F+NG+N + N + N V + A + LY+ A D + ++
Sbjct: 155 VLHPQFQNGTNAPYVVQSNLMQNNVNLTGAEQEKGLDLYKNSATANNDEIFYN 207
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 229 LPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFN 101
LP S N + ++Y N+ +++A + W+ S FN
Sbjct: 1114 LPPSINSNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLNFN 1156
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 5.9
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = -2
Query: 616 HDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 476
H N K + S SC+ V SK + I D DKK + Y
Sbjct: 76 HGNSGSQKTHNVSFSCEIRKVKSSKLSPISNMEDSEDKKEEDESSSY 122
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 703 NDLRDRIKSK-VDEQFDQLEREYSDKIDGFHDNIQYFKD 590
ND R ++S + E+ Q+ +SDK DNI F++
Sbjct: 660 NDTRCEVRSSSILEELGQVTHVFSDKTGTLTDNIMLFRN 698
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 688 RIKSKVDEQFDQLEREYSDKIDGFHDNI 605
R + K D ++ LEREY D F +++
Sbjct: 285 RAQLKKDPNYESLEREYQKACDDFENSL 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,363,706
Number of Sequences: 5004
Number of extensions: 69682
Number of successful extensions: 222
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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