Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p14
(851 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4) 37 0.018
SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.68
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 31 0.90
SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48) 31 1.6
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79) 30 2.7
SB_22160| Best HMM Match : Arc (HMM E-Value=7.5) 30 2.7
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3) 29 3.6
SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023) 29 3.6
SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 29 4.8
SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06) 29 4.8
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 6.3
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 6.3
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 28 8.4
>SB_21206| Best HMM Match : PaREP8 (HMM E-Value=2.4)
Length = 589
Score = 37.1 bits (82), Expect = 0.018
Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = -2
Query: 727 IRSVTRKNNDLRDRIKSKV-DEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVL 551
++ ++ + D IK V DE+ Q ++ S+ ID N+Q+ + + C G+++
Sbjct: 42 LKLISELEKYISDAIKDDVSDEELQQHKKNASEHIDPESQNLQFKCQSEHEILCMWGNIV 101
Query: 550 KSKFAKILK--SHDYT 509
K+ K +K SHD++
Sbjct: 102 KNPRLKCVKFDSHDFS 117
>SB_30263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 976
Score = 32.7 bits (71), Expect = 0.39
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 373 YNPIGNKVIVPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKLI 230
++ + +V F H I G+Y Y L D + + +QF E V+KL+
Sbjct: 644 HSAVAETAVVGFPHPIKGEGIYAYATLK--DDAQIEPEQFREEVKKLV 689
>SB_12550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 31.9 bits (69), Expect = 0.68
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Frame = -2
Query: 238 KLILPSSFNDSEKVLYY----NEASKNKNMIYKALEFTTESSWVKSNKFNWKI 92
KLI PS + E++LYY E SK+K + AL W KS++ I
Sbjct: 85 KLIHPSKLPEVEQLLYYLQNRKENSKSKETVLGALSRVMREDWRKSSELTTNI 137
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 592 DEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQL 461
D H+S++CQ+ + + +K HD+ S+ T ++C P L
Sbjct: 9 DRHHSLTCQSNAEVITKSYPGPSIHDFVTNTSLATIMQHCAPLL 52
>SB_30188| Best HMM Match : fn1 (HMM E-Value=0.48)
Length = 334
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 703 NDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 563
N R+ +K KV + LEREY D + F+D + +D H ++ Q+
Sbjct: 231 NLARESLKLKVRDSTLWLEREYMDSFERFNDKLPAKEDFHSTMYDQH 277
>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
Length = 1091
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = -2
Query: 739 ISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 584
+S P S +N R+KS ++ D L+ ++S +D HD I+ K+E+
Sbjct: 776 VSAPSTSSDLNSNQ---RVKS-LENSLDFLQAQHSQVLDNLHDEIERLKEEN 823
>SB_22160| Best HMM Match : Arc (HMM E-Value=7.5)
Length = 246
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = -2
Query: 355 KVIVPFAHEINDTGLYEYDVLA--YVDSVEFDGKQFEEFV 242
K+ + F+H+ GL ++++ Y + VEF+ KQFEEFV
Sbjct: 184 KMAIVFSHQF---GLRGFNIIMDEYENRVEFEYKQFEEFV 220
>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
Length = 719
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 460 VDKHNDCYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVP 341
++K C V V +L PGF+ S +E+ K I+P
Sbjct: 268 LEKIKACSVFVPILTPGFQESSKHQQEYEFARANQKQIIP 307
>SB_15052| Best HMM Match : Pox_A32 (HMM E-Value=0.0023)
Length = 1901
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = -2
Query: 727 IRSVTRKNNDLRDRIKSKVDEQFD--QLEREYSDKIDGFHDNIQ-YFKDEHYSVS 572
+RS+ RKN +L +R S +DE + QLERE ++ D ++ FK ++V+
Sbjct: 1843 LRSIDRKNEELSER-NSVIDETLEENQLERENLEERMSLKDRVKAIFKKYGFTVA 1896
>SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = -2
Query: 727 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH 584
IRS K D D+ + + +++ D+ + Y D + D+++ + H
Sbjct: 561 IRSALTKERDSMDKERERFNQKLDETRQHYEDVLRQLRDDLEEERQGH 608
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = -2
Query: 766 TKPVLMMFNISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 587
T P + N S +RS+ RKN +L +K K+DE+ QL ++ + ++ + +D+
Sbjct: 375 TSPKMDRTNGSQELRSLQRKNVELSSLVK-KLDEKNQQLATRNAELMSELENSNKEHRDK 433
Query: 586 HYSVSCQN 563
+ + +N
Sbjct: 434 NKRLEKKN 441
>SB_36763| Best HMM Match : EGF (HMM E-Value=1.7e-06)
Length = 155
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = -2
Query: 511 TDKKSIETYEKYCLPQLVDKHNDCYVAV----CVLKPGFENGSN 392
T KK Y+ C P L H DC + C PGFE G N
Sbjct: 41 TKKKKALCYKASCQPLLCGLHGDCVEVIQSYKCECHPGFE-GDN 83
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = -2
Query: 721 SVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI 626
SVT++NN++++R+K +E+ + E DK+
Sbjct: 199 SVTQRNNEIQERLKQLEEEEEARKRAELEDKM 230
>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1741
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = -2
Query: 658 DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEK 479
D L+R++ HD I H + C+ G +S+ +K+H KS K
Sbjct: 1472 DNLQRKFIGSKLQSHDRINV--KPHQCIVCRKGFTARSRLLHHVKAHHNMKTKSNIFTCK 1529
Query: 478 YCLPQLVDKHND 443
YC + + H+D
Sbjct: 1530 YC-GRAITNHSD 1540
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 28.3 bits (60), Expect = 8.4
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = -2
Query: 658 DQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTD--KKSIETY 485
D+ RE+S+++ DN+ FK+E S C N + +S I K + T+ +K ++
Sbjct: 428 DKFRREFSERVGEVIDNLSEFKEESTSF-CSN--ISQSIGMLISKKSEETNDLQKQMDRM 484
Query: 484 EKYCLPQLVDKHNDCYV 434
L ++V+ N+ V
Sbjct: 485 ANDLLERMVEISNNAKV 501
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,538,597
Number of Sequences: 59808
Number of extensions: 504820
Number of successful extensions: 1562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1559
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -