Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p14
(851 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like... 33 0.50
AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA... 33 0.50
AE014296-847|AAF47899.1| 604|Drosophila melanogaster CG15020-PA... 32 0.87
AY071348-1|AAL48970.1| 223|Drosophila melanogaster RE38619p pro... 31 2.0
AE014297-4698|AAF57107.1| 223|Drosophila melanogaster CG1715-PA... 31 2.0
X94917-1|CAA64402.1| 223|Drosophila melanogaster protein ( D.me... 30 4.6
AY119170-1|AAM51030.1| 620|Drosophila melanogaster RH49114p pro... 29 6.1
AE013599-768|AAF59002.2| 609|Drosophila melanogaster CG8196-PA ... 29 6.1
AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynei... 29 8.1
>AF220353-1|AAF32355.1| 2244|Drosophila melanogaster kinesin-like
kinetochore motorprotein CENP-meta protein.
Length = 2244
Score = 33.1 bits (72), Expect = 0.50
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 637 SDKIDGFHDNIQYFK--DEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 476
+DKI ++Q F ++H+ V C+ LK K A++ D +++S+ E+Y
Sbjct: 505 TDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQESLAEKERY 560
>AE014134-2053|AAF53088.2| 2013|Drosophila melanogaster CG6392-PA
protein.
Length = 2013
Score = 33.1 bits (72), Expect = 0.50
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -2
Query: 637 SDKIDGFHDNIQYFK--DEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKY 476
+DKI ++Q F ++H+ V C+ LK K A++ D +++S+ E+Y
Sbjct: 505 TDKIKKEIQDLQMFTSLEKHFEVECEEVQGLKEKLAEVTAQRDNLEQESLAEKERY 560
>AE014296-847|AAF47899.1| 604|Drosophila melanogaster CG15020-PA
protein.
Length = 604
Score = 32.3 bits (70), Expect = 0.87
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 448 NDCYVAVCVLKPGFENGSN---QVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVLAYVDS 278
NDCY NG+N Q++ P+ +K+I F +D+G+YE V AY+ +
Sbjct: 395 NDCYA---------HNGANKRIQLIDQHGCPVDDKLISRFRGSWSDSGVYETQVYAYMKT 445
Query: 277 VEFDG 263
F G
Sbjct: 446 FRFTG 450
>AY071348-1|AAL48970.1| 223|Drosophila melanogaster RE38619p
protein.
Length = 223
Score = 31.1 bits (67), Expect = 2.0
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = -2
Query: 709 KNNDLRDRIKSKVDEQFDQ----LEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSK 542
KN++L +K++E + LE+EY++ ++ H H CQ+ LKS+
Sbjct: 113 KNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKRFVSTASSHKVPPCQD---LKSQ 169
Query: 541 FAKILKSHDYTDKKSIETYEKYCLPQLVDKH 449
++H K IE ++ Q +D H
Sbjct: 170 LLACYRAHPGETLKCIEEVAQF--RQCIDLH 198
>AE014297-4698|AAF57107.1| 223|Drosophila melanogaster CG1715-PA
protein.
Length = 223
Score = 31.1 bits (67), Expect = 2.0
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = -2
Query: 709 KNNDLRDRIKSKVDEQFDQ----LEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSK 542
KN++L +K++E + LE+EY++ ++ H H CQ+ LKS+
Sbjct: 113 KNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKRFVSTASSHKVPPCQD---LKSQ 169
Query: 541 FAKILKSHDYTDKKSIETYEKYCLPQLVDKH 449
++H K IE ++ Q +D H
Sbjct: 170 LLACYRAHPGETLKCIEEVAQF--RQCIDLH 198
>X94917-1|CAA64402.1| 223|Drosophila melanogaster protein (
D.melanogaster mRNAfor coding region cloned by GAL4
enhancer trap line.).
Length = 223
Score = 29.9 bits (64), Expect = 4.6
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Frame = -2
Query: 709 KNNDLRDRIKSKVDEQFDQ----LEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSK 542
KN++L +K++E + LE+EY++ ++ H H CQ+ LKS+
Sbjct: 113 KNDELWKERMAKLEENLKKTNTILEKEYANAVENVHKRFVSTASSHKVPPCQD---LKSQ 169
Query: 541 FAKILKSHDYTDKKSIETYEKYCLPQLVDKH 449
++H K +E ++ Q +D H
Sbjct: 170 LLACYRAHPGETLKCMEEVAQF--RQCIDLH 198
>AY119170-1|AAM51030.1| 620|Drosophila melanogaster RH49114p
protein.
Length = 620
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = -2
Query: 244 VQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTT 134
+QK++ S D++++ YY EA ++KN ++ +L F T
Sbjct: 157 IQKIV--QSSKDADELKYYWEAWRDKNQLWASLNFYT 191
>AE013599-768|AAF59002.2| 609|Drosophila melanogaster CG8196-PA
protein.
Length = 609
Score = 29.5 bits (63), Expect = 6.1
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = -2
Query: 244 VQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTT 134
+QK++ S D++++ YY EA ++KN ++ +L F T
Sbjct: 157 IQKIV--QSSKDADELKYYWEAWRDKNQLWASLNFYT 191
>AF313479-1|AAG29545.1| 4167|Drosophila melanogaster 1-beta dynein
protein.
Length = 4167
Score = 29.1 bits (62), Expect = 8.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -2
Query: 559 SVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLVDKHNDCYVAV 428
SV+ KF + + D KKS + ++K C L+++ D Y+ +
Sbjct: 309 SVVLKKFESVRREFDKEVKKSFDEWQKNCCSLLLNQKLDRYLLI 352
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,964,359
Number of Sequences: 53049
Number of extensions: 709061
Number of successful extensions: 2312
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2312
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4085918148
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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