Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p13
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   3.8  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    24   5.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   6.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   6.7  

>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 99  CEVKTQLCAIQESLNEAIS 155
           C + T+ C+I+E LNE  S
Sbjct: 247 CNLNTKACSIEELLNEIAS 265


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 24.2 bits (50), Expect = 5.1
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 66  MGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQ 233
           M  + K+++ +   +T L     +LNEA  ++        P P  N +QD+ + +Q
Sbjct: 309 MENEKKLYEKVNTNRTLLRNANLTLNEAQQSVKSLTERQGPRPSDNGVQDLQEKMQ 364


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 98  LRSKNATVCDSGESQRGH 151
           LRS+ A VC+SG+++  H
Sbjct: 719 LRSRVALVCESGDAREVH 736


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 98   KRIKYFALSAHKQVANNRFKNVIFFRTFFIIQ 3
            K+I+ FAL   K   N+R +N+   R   ++Q
Sbjct: 1911 KQIEMFALKTQKDSNNHREENLQLHRQLGVLQ 1942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,163,875
Number of Sequences: 5004
Number of extensions: 19271
Number of successful extensions: 37
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)