Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p13
         (326 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of...    28   7.7  
S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.          28   7.7  
D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.               28   7.7  
BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural mainten...    28   7.7  
AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance ...    28   7.7  

>Z97054-3|CAI42646.1| 1233|Homo sapiens structural maintenance of
            chromosomes 1A protein.
          Length = 1233

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 102  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSE 239
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDE 1044


>S78271-1|AAB34405.1| 1233|Homo sapiens SB1.8/DXS423E protein.
          Length = 1233

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 102  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSE 239
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDE 1044


>D80000-1|BAA11495.2| 1233|Homo sapiens KIAA0178 protein.
          Length = 1233

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 102  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSE 239
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDE 1044


>BC112127-1|AAI12128.1| 1233|Homo sapiens SMC1 structural maintenance
            of chromosomes 1-like 1 protein.
          Length = 1233

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 102  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSE 239
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDE 1044


>AL161779-1|CAI42089.1| 1233|Homo sapiens structural maintenance of
            chromosomes 1A protein.
          Length = 1233

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 102  EVKTQLCAIQESLNEAISTLNVHAAANSPAPD-INKLQDMIQDLQSE 239
            E+K ++  +Q+ LNE  S L   AA N  A + +  ++D  Q+   E
Sbjct: 998  EIKQEMNTLQQKLNEQQSVLQRIAAPNMKAMEKLESVRDKFQETSDE 1044


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,051,138
Number of Sequences: 237096
Number of extensions: 647428
Number of successful extensions: 1306
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)