Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p13
(326 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-2235|AAF58027.2| 1630|Drosophila melanogaster CG33017-P... 30 0.79
AY089625-1|AAL90363.1| 826|Drosophila melanogaster RE38137p pro... 29 1.4
AE014297-779|AAF54263.1| 826|Drosophila melanogaster CG9770-PA ... 29 1.4
BT003272-1|AAO25029.1| 1109|Drosophila melanogaster LD16921p pro... 27 5.5
AE014297-4644|AAF57071.4| 551|Drosophila melanogaster CG31016-P... 27 5.5
AE014296-1852|AAF50133.2| 1149|Drosophila melanogaster CG7958-PB... 27 5.5
AE014296-1851|AAF50134.3| 1135|Drosophila melanogaster CG7958-PA... 27 5.5
AY084142-1|AAL89880.1| 524|Drosophila melanogaster RE25175p pro... 27 7.3
AE014296-975|AAF50765.1| 524|Drosophila melanogaster CG10592-PA... 27 7.3
BT023905-1|ABA81839.1| 2753|Drosophila melanogaster GH18167p pro... 26 9.7
AJ544075-1|CAD66435.1| 2935|Drosophila melanogaster zormin protein. 26 9.7
AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD... 26 9.7
AE014296-409|ABI31228.1| 3090|Drosophila melanogaster CG33484-PB... 26 9.7
AE014296-408|AAF47606.3| 2946|Drosophila melanogaster CG33484-PA... 26 9.7
AE014296-407|ABI31229.1| 2947|Drosophila melanogaster CG33484-PC... 26 9.7
>AE013599-2235|AAF58027.2| 1630|Drosophila melanogaster CG33017-PB
protein.
Length = 1630
Score = 29.9 bits (64), Expect = 0.79
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 105 VKTQLCAIQESLNEAISTLNVHAAANSPAP-DINKLQDMIQDLQSE 239
VK + S N A T+ HAAANS P D+N I LQ E
Sbjct: 1362 VKRRTTTRSPSQNAAKRTMETHAAANSKLPFDLNSAAYFICKLQDE 1407
>AY089625-1|AAL90363.1| 826|Drosophila melanogaster RE38137p
protein.
Length = 826
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -2
Query: 325 IIYSGTLNPLYFLNSPKLYQW*K*FFLLYSDCKSCIISCN 206
++++ T++PL +L+SP + + LL S+C CI+ CN
Sbjct: 149 LLFNMTVHPLLYLDSPIVQIDDFEYLLLVSNCAKCIL-CN 187
>AE014297-779|AAF54263.1| 826|Drosophila melanogaster CG9770-PA
protein.
Length = 826
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -2
Query: 325 IIYSGTLNPLYFLNSPKLYQW*K*FFLLYSDCKSCIISCN 206
++++ T++PL +L+SP + + LL S+C CI+ CN
Sbjct: 149 LLFNMTVHPLLYLDSPIVQIDDFEYLLLVSNCTKCIL-CN 187
>BT003272-1|AAO25029.1| 1109|Drosophila melanogaster LD16921p protein.
Length = 1109
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 75 QGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAA-NSPAPDINKLQDM 218
Q ++ + L +TQL + L+ + + + AAA N A D+N LQD+
Sbjct: 1023 QEQLLNSLMSSQTQLKFSESDLSAELQSFDAAAAAINDTAHDLNLLQDV 1071
>AE014297-4644|AAF57071.4| 551|Drosophila melanogaster CG31016-PA
protein.
Length = 551
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 18 RPKEYYVLKSII-SDL-LMGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSPA 191
+P++Y+ + I +D+ L+ A+ + + T + EA S L VH N P
Sbjct: 219 QPRKYHEVMGITKADVTLLLARSLIASGNVSIATDMLMRDFMFGEAGSALTVHFLRNKPK 278
Query: 192 PDIN 203
P IN
Sbjct: 279 PSIN 282
>AE014296-1852|AAF50133.2| 1149|Drosophila melanogaster CG7958-PB,
isoform B protein.
Length = 1149
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 75 QGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAA-NSPAPDINKLQDM 218
Q ++ + L +TQL + L+ + + + AAA N A D+N LQD+
Sbjct: 1063 QEQLLNSLMSSQTQLKFSESDLSAELQSFDAAAAAINDTAHDLNLLQDV 1111
>AE014296-1851|AAF50134.3| 1135|Drosophila melanogaster CG7958-PA,
isoform A protein.
Length = 1135
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 75 QGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAA-NSPAPDINKLQDM 218
Q ++ + L +TQL + L+ + + + AAA N A D+N LQD+
Sbjct: 1049 QEQLLNSLMSSQTQLKFSESDLSAELQSFDAAAAAINDTAHDLNLLQDV 1097
>AY084142-1|AAL89880.1| 524|Drosophila melanogaster RE25175p
protein.
Length = 524
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 140 ETLLNRTQLRFYFAKRIKYFA--LSAHKQVANNRFKNVIFF 24
E L RF+ K A L+ HK++ NR KNVI F
Sbjct: 41 EALDEELDTRFWHDKAQSILADKLAGHKKLNENRAKNVILF 81
>AE014296-975|AAF50765.1| 524|Drosophila melanogaster CG10592-PA
protein.
Length = 524
Score = 26.6 bits (56), Expect = 7.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -1
Query: 140 ETLLNRTQLRFYFAKRIKYFA--LSAHKQVANNRFKNVIFF 24
E L RF+ K A L+ HK++ NR KNVI F
Sbjct: 41 EALDEELDTRFWHDKAQSILADKLAGHKKLNENRAKNVILF 81
>BT023905-1|ABA81839.1| 2753|Drosophila melanogaster GH18167p
protein.
Length = 2753
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 81 KVFDPLCEVKTQLCAIQESLNE 146
K+ DP E K+ A+QE+LN+
Sbjct: 524 KIVDPYLETKSSAQAVQETLND 545
>AJ544075-1|CAD66435.1| 2935|Drosophila melanogaster zormin protein.
Length = 2935
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 81 KVFDPLCEVKTQLCAIQESLNE 146
K+ DP E K+ A+QE+LN+
Sbjct: 706 KIVDPYLETKSSAQAVQETLND 727
>AE014296-410|ABI31230.1| 3651|Drosophila melanogaster CG33484-PD,
isoform D protein.
Length = 3651
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 81 KVFDPLCEVKTQLCAIQESLNE 146
K+ DP E K+ A+QE+LN+
Sbjct: 717 KIVDPYLETKSSAQAVQETLND 738
>AE014296-409|ABI31228.1| 3090|Drosophila melanogaster CG33484-PB,
isoform B protein.
Length = 3090
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 81 KVFDPLCEVKTQLCAIQESLNE 146
K+ DP E K+ A+QE+LN+
Sbjct: 717 KIVDPYLETKSSAQAVQETLND 738
>AE014296-408|AAF47606.3| 2946|Drosophila melanogaster CG33484-PA,
isoform A protein.
Length = 2946
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 81 KVFDPLCEVKTQLCAIQESLNE 146
K+ DP E K+ A+QE+LN+
Sbjct: 717 KIVDPYLETKSSAQAVQETLND 738
>AE014296-407|ABI31229.1| 2947|Drosophila melanogaster CG33484-PC,
isoform C protein.
Length = 2947
Score = 26.2 bits (55), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 81 KVFDPLCEVKTQLCAIQESLNE 146
K+ DP E K+ A+QE+LN+
Sbjct: 717 KIVDPYLETKSSAQAVQETLND 738
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,275,240
Number of Sequences: 53049
Number of extensions: 207518
Number of successful extensions: 453
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 693319869
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -