Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p13
(326 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical ... 31 0.26
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 29 1.0
AF022975-8|AAB70667.4| 195|Caenorhabditis elegans Hypothetical ... 29 1.0
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 29 1.0
U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-link... 27 2.4
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 27 2.4
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 27 2.4
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 27 2.4
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 27 2.4
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 27 2.4
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 27 2.4
>AF016430-5|AAB65373.1| 581|Caenorhabditis elegans Hypothetical
protein C05C8.6 protein.
Length = 581
Score = 30.7 bits (66), Expect = 0.26
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 15 KRPKEYYVLKSIISDLLMGAQGKVFDPLCEVKTQLCAIQESLNEAISTLNVHAAANSP 188
K E+ + ++ G Q +FDPL V +L + S+NE +++ A +N P
Sbjct: 520 KNQDEWVTIVDRTNEECHGWQELIFDPLPVVYIRLVGTRNSINEVFHVVHLEAPSNVP 577
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 102 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSE 239
+V QL +I ESL ++ + +++ ANS P+ + + DL +
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQ 587
>AF022975-8|AAB70667.4| 195|Caenorhabditis elegans Hypothetical
protein K09C6.9 protein.
Length = 195
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 90 DPLCEVKTQLCAIQESLNEAISTLNVHAAAN 182
DP K + C I S+N+AI+ +N+++ N
Sbjct: 60 DPELVSKAKTCVINNSMNKAIAAMNLYSGFN 90
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 102 EVKTQLCAIQESLNEAISTLNVHAAANSPAPDINKLQDMIQDLQSE 239
+V QL +I ESL ++ + +++ ANS P+ + + DL +
Sbjct: 542 QVLVQLASIYESLEDSAQAIELYSQANSLVPNDPAILSKLADLYDQ 587
>U22831-13|AAM98013.1| 245|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform d protein.
Length = 245
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 9 NKKRPKEYYVLKSIISDLLMGAQG 80
N ++P Y++ ISDLL+G +G
Sbjct: 35 NIRQPTNYFIFSLAISDLLIGLEG 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,413,053
Number of Sequences: 27780
Number of extensions: 107937
Number of successful extensions: 289
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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