Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p11
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    71   2e-13
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    30   0.37 
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    28   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    28   2.0  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   4.6  
SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    27   4.6  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   6.1  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   6.1  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   6.1  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   8.1  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
 Frame = -1

Query: 799 RPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQ-EPLTSTMLAAAPLQEQKQMLGERL 623
           R P+ +Q  RP     +     P   +    + G  E  T+  LAA P + +KQ+LGE L
Sbjct: 535 RGPVPAQG-RPMMMPGSVPSAGPAEAEAVPAVPGMPERFTAADLAAVPEESRKQVLGELL 593

Query: 622 FPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 479
           +P +      L+GKITGMLLE+ NSELL +LE   +L  +V+EA+ VL
Sbjct: 594 YPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPBC947.12 |kms2||spindle pole body protein
           Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 484 QQQLHLL*LSETLHVLTYEEVLNYQFPKAYQLFSQPNQGAFSE 612
           QQQ H++ + E +H +  E      + K   L  Q  +GAF E
Sbjct: 249 QQQAHIVRMEELIHAVEKERKTETDYMKKESLSEQKERGAFME 291


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 749 TKHAQPTSSTTSSA--YPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 609
           + H QPTS+T+SS+  YP +R +    A SS++P   +    TT S  S
Sbjct: 236 SSHLQPTSATSSSSRLYP-SRPAPTPPASSSSSPLLSSQTVKTTTSNAS 283


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 847 RPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQP 716
           RPI       A  ++ +PPL   SSR +      N + PP P P
Sbjct: 273 RPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPP 316


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 673 LAAAPLQEQKQMLGERLF-PLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVD 497
           L +A +Q+  +M G+  F P ++R H D  GK   +     +  LLH L    +   K++
Sbjct: 290 LESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALEGRSGHINLLHALTGQFATSFKIE 349


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 838 TGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP 728
           T Q  +A++A S   P  +Q SRPA     P+   PP
Sbjct: 548 TTQSVLASSAPSAGRPAAAQISRPAQLFRIPSTNPPP 584


>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 149 ENFRYIHFSLIYYLILWELALVLSF 75
           +NF Y+ F  ++ L++W++  + SF
Sbjct: 184 KNFAYLTFISLFVLVIWQILYLRSF 208


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 613 IQRMHPDLAGKITGMLLEID-NSELLHMLEHAESLKAKVDEAV 488
           +QR++P    ++ G LL+ID + EL+  L  +   +  VDE V
Sbjct: 801 VQRINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELV 843


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 793 PLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGER 626
           PL S++      ++ PN R+      +V  + +EP  +  + A PL + +  L +R
Sbjct: 12  PLESENESSLTSRFLPNKRDGGKDNESVIPEKEEPDLNEPVLAVPLPKSRYALTKR 67


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/69 (26%), Positives = 37/69 (53%)
 Frame = -3

Query: 806 IYSSTFSISKQSPSQL*IYTKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGT 627
           + S+T S S  SPS     T    P+SS++SS+   + +S    + SS++  + + +  +
Sbjct: 132 VSSTTSSSSSSSPSSS-STTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190

Query: 626 TVSTYSENA 600
           + S+ S ++
Sbjct: 191 SSSSSSSSS 199


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 766 ANYKYTPNMRNPPAPQPAVHIQGQEPL 686
           AN + T NMR+P      +HIQ +EP+
Sbjct: 815 ANCEKTNNMRDPLTSTIFLHIQPKEPI 841


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 755  IYTKHAQPTSSTTSSAYPRTRTSD 684
            +YT H  PT+   SSA P  +T D
Sbjct: 1266 LYTIHQVPTTQRESSALPSDKTFD 1289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,927
Number of Sequences: 5004
Number of extensions: 61059
Number of successful extensions: 249
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)