Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p11
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 89 4e-18
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 77 2e-14
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710... 76 4e-14
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 73 4e-13
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 69 6e-12
09_06_0119 - 20969450-20969643,20969767-20970088,20970147-209703... 32 0.52
10_07_0107 - 12936839-12937030,12937305-12937386,12937476-129375... 32 0.69
08_01_0181 + 1530623-1531626,1531723-1531902,1531998-1532177,153... 32 0.69
02_05_0627 + 30463452-30463774,30463841-30463956,30464125-304643... 32 0.69
04_03_0709 + 18902507-18902704,18902795-18905028,18905114-189053... 31 0.91
11_06_0069 + 19770182-19770379,19770470-19772703,19772789-197730... 31 1.2
11_03_0206 + 11655132-11655232,11655433-11655823 31 1.6
09_02_0082 - 4060018-4061604 31 1.6
08_02_0912 - 22536181-22537011 30 2.1
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 30 2.8
07_03_0649 - 20260501-20260512,20260620-20260833,20261207-202614... 30 2.8
07_03_0644 - 20242283-20242294,20242402-20242615,20242989-202432... 30 2.8
06_03_0002 - 15280292-15281550,15282714-15282840 30 2.8
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 25 3.2
12_02_0193 + 15242068-15242265,15242356-15244589,15244675-152449... 29 3.7
12_02_0063 + 13098519-13099585,13099759-13099906 29 3.7
11_04_0270 - 15590955-15591146,15591421-15591502,15591592-155917... 29 3.7
10_01_0112 - 1386762-1386953,1387228-1387309,1387399-1387509,138... 29 3.7
09_02_0131 - 4693828-4694019,4694107-4694199,4694294-4694375,469... 29 3.7
08_02_0194 + 14084828-14085025,14085116-14085788,14085855-140870... 29 3.7
08_01_0440 + 3875422-3875619,3875710-3876382,3876449-3877943,387... 29 3.7
06_01_1169 + 9996068-9996265,9996356-9998589,9998675-9998926,999... 29 3.7
06_01_1155 + 9777611-9777808,9777899-9780132,9780218-9780469,978... 29 3.7
05_01_0577 + 5159934-5160131,5160222-5162455,5162541-5162792,516... 29 3.7
05_01_0571 - 5067558-5067749,5068024-5068105,5068195-5068305,506... 29 3.7
03_04_0168 + 17953848-17954585 29 3.7
02_04_0029 + 19036176-19036481,19036602-19036733,19036814-190369... 29 3.7
02_01_0374 - 2702804-2702995,2703270-2703351,2703441-2703551,270... 29 3.7
01_06_0075 - 26201231-26201422,26201697-26201778,26201868-262019... 29 3.7
01_05_0224 + 19485296-19485493,19485584-19487817,19487903-194881... 29 4.9
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 28 8.5
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 28 8.5
07_01_0008 - 56178-57095 28 8.5
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 28 8.5
02_03_0251 + 16849905-16851308 28 8.5
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 89.0 bits (211), Expect = 4e-18
Identities = 47/100 (47%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Frame = -1
Query: 772 RPANYKYTPN--MRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMH 599
R ++ KY PN M N A I + +LA AP +EQK MLG RL+PL++R H
Sbjct: 408 RFSHAKYIPNDIMANGLAIHHGDSISSMNDAFNNLLATAPPEEQKNMLGNRLYPLVERHH 467
Query: 598 PDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 479
PDLA KITGMLLE+ NSE++ +L + L AK++E V +L
Sbjct: 468 PDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLL 507
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 77.0 bits (181), Expect = 2e-14
Identities = 36/68 (52%), Positives = 51/68 (75%)
Frame = -1
Query: 682 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 503
+T LA A +Q+ MLGE L+PL+ ++ + A K+TGMLLE+D +E+LH+LE E+LKAK
Sbjct: 567 ATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAK 626
Query: 502 VDEAVAVL 479
V EA+ VL
Sbjct: 627 VAEAMEVL 634
>08_02_0163 +
13470178-13470335,13470635-13470656,13470885-13471055,
13471157-13471363,13471458-13471700
Length = 266
Score = 75.8 bits (178), Expect = 4e-14
Identities = 34/68 (50%), Positives = 52/68 (76%)
Frame = -1
Query: 682 STMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAK 503
++ LA +P +Q+ MLGE L+PL+ ++ D A K+TGMLLE+D +E+LH++E ++LKAK
Sbjct: 173 ASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAK 232
Query: 502 VDEAVAVL 479
V EA+ VL
Sbjct: 233 VAEAMEVL 240
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 72.5 bits (170), Expect = 4e-13
Identities = 35/70 (50%), Positives = 53/70 (75%)
Frame = -1
Query: 688 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLK 509
LTS + A P ++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+LE E+LK
Sbjct: 578 LTSALANANP-EQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALK 636
Query: 508 AKVDEAVAVL 479
+KV EA+ VL
Sbjct: 637 SKVAEAMDVL 646
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 68.5 bits (160), Expect = 6e-12
Identities = 32/80 (40%), Positives = 56/80 (70%)
Frame = -1
Query: 718 PAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEIDNSELL 539
P +Q T LA+A ++Q+++LG+ LFPL++++ + A K+TGMLLE+D +E+L
Sbjct: 560 PVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVL 619
Query: 538 HMLEHAESLKAKVDEAVAVL 479
+++E ++L+ KV EA+ VL
Sbjct: 620 NLVESPDTLRDKVAEAMKVL 639
>09_06_0119 -
20969450-20969643,20969767-20970088,20970147-20970380,
20970659-20970789,20970874-20971147
Length = 384
Score = 32.3 bits (70), Expect = 0.52
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -1
Query: 700 GQEPLTSTMLAAAPLQEQKQMLGE 629
G +PLTST++A P+QEQ M E
Sbjct: 126 GYDPLTSTLVAVLPMQEQLNMFAE 149
>10_07_0107 -
12936839-12937030,12937305-12937386,12937476-12937586,
12937667-12937918,12938004-12940237,12940328-12940525
Length = 1022
Score = 31.9 bits (69), Expect = 0.69
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A +T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSLTPSSSQAMTAAAPAPPSPPEPPSPRHLPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>08_01_0181 +
1530623-1531626,1531723-1531902,1531998-1532177,
1532363-1532442,1532528-1532701,1533001-1533118,
1533223-1533301
Length = 604
Score = 31.9 bits (69), Expect = 0.69
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Frame = -1
Query: 622 FPLIQRMHPDLAGKITGMLL--EIDNSELLHMLEHAE-SLKAKVDEAVAVL 479
F +QR+ P+ GKI G++L E D EL+ + E +L AK+++ A L
Sbjct: 11 FARVQRVEPEHVGKIFGVMLLREPDEDELVQLAYGPEATLLAKIEDTKAAL 61
>02_05_0627 +
30463452-30463774,30463841-30463956,30464125-30464371,
30464458-30464555,30465216-30465284,30465752-30465820,
30465913-30466028
Length = 345
Score = 31.9 bits (69), Expect = 0.69
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -1
Query: 823 VAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAP 722
+A+AAAS PPL + S++P ++ M PPAP
Sbjct: 50 LASAAASSPPPLPAASAQPHCSRWVVVMERPPAP 83
>04_03_0709 +
18902507-18902704,18902795-18905028,18905114-18905365,
18905446-18905556,18905646-18905727,18906002-18906193
Length = 1022
Score = 31.5 bits (68), Expect = 0.91
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA++ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAALAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>11_06_0069 +
19770182-19770379,19770470-19772703,19772789-19773040,
19773121-19773231,19773321-19773402,19773677-19773868
Length = 1022
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A +T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSLTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>11_03_0206 + 11655132-11655232,11655433-11655823
Length = 163
Score = 30.7 bits (66), Expect = 1.6
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVH 707
+G P++ ++G +ASI L SSR + P+ +NPP P+PA+H
Sbjct: 38 VGNGPLSRRRG---CSASITLCLGLPSSRAHACRAVPDGQNPPNPRPALH 84
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.7 bits (66), Expect = 1.6
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
Frame = -1
Query: 826 GVAAAAASIRPPLVSQSSR-PANYKYTPNMRNPPAPQP---AVHI---QGQEPLTSTMLA 668
G ++++A+ R P+ + R PA + P + +PPAP P A H+ P T LA
Sbjct: 140 GASSSSATPRAPIAPLALRAPAPHLCVPRVLSPPAPTPPVLATHVPTPPAPAPPVPTPLA 199
Query: 667 AAP 659
AP
Sbjct: 200 PAP 202
>08_02_0912 - 22536181-22537011
Length = 276
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -1
Query: 835 GQQGVAAAAASIR-----PPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTML 671
G+ G AAAA ++ PPLV+ + R ++ + PP P P + ++ + T
Sbjct: 110 GENGKAAAAENVEVQTPPPPLVADAPR-----HSKKRKAPPPPSPPREEEAEDAVFQTTP 164
Query: 670 AAAPLQEQKQMLGERLFP 617
+ + +++L R FP
Sbjct: 165 PPSHKKVAERILNRRFFP 182
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 625 LFPLIQRMHPDLAGKITGMLLEIDNSEL 542
+F +Q + P+LA I GMLL DN+E+
Sbjct: 10 VFARLQALEPNLAPNIIGMLLTKDNNEM 37
>07_03_0649 -
20260501-20260512,20260620-20260833,20261207-20261429,
20261706-20261931,20262051-20262494
Length = 372
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -1
Query: 820 AAAAASIRPPLVSQSSRPANYKYTP-----NMRNPPAPQPAVHIQGQEPLTSTMLAAAP 659
AAAAA+ P +S S+RP + P + +P P P+ G P+ + AAP
Sbjct: 14 AAAAAAAGPRPLSLSARPLYRQQDPLFLASRVASPAPPPPSATADGARPVEAAPAGAAP 72
>07_03_0644 -
20242283-20242294,20242402-20242615,20242989-20243211,
20243488-20243713,20243833-20244276
Length = 372
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = -1
Query: 820 AAAAASIRPPLVSQSSRPANYKYTP-----NMRNPPAPQPAVHIQGQEPLTSTMLAAAP 659
AAAAA+ P +S S+RP + P + +P P P+ G P+ + AAP
Sbjct: 14 AAAAAAAGPRPLSLSARPLYRQQDPLFLASRVASPAPPPPSATADGARPVEAAPAGAAP 72
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 832 QQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTS 680
++G AA AS+ PP S N + +R PPAP P + PL S
Sbjct: 107 RRGAAAPRASLHPPAPPHSQPNLNLCHCCGVRFPPAP-PGAKRRPVRPLRS 156
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 25.0 bits (52), Expect(2) = 3.2
Identities = 6/10 (60%), Positives = 7/10 (70%)
Frame = -3
Query: 836 WTARSCCCCC 807
W + CCCCC
Sbjct: 613 WPSWCCCCCC 622
Score = 23.0 bits (47), Expect(2) = 3.2
Identities = 5/7 (71%), Positives = 6/7 (85%)
Frame = -3
Query: 821 CCCCCIY 801
CCCCC +
Sbjct: 617 CCCCCCF 623
>12_02_0193 +
15242068-15242265,15242356-15244589,15244675-15244926,
15245007-15245117,15245207-15245288,15245563-15245754
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -1
Query: 868 IRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAV 710
++ ++ A+P+ Q V A+AA R + P Y + PPAP +V
Sbjct: 230 MKGAVSAKPMAPQSSVTASAAPPRCAVAPSQHHPPFQTYPTDPFEPPAPAASV 282
>11_04_0270 -
15590955-15591146,15591421-15591502,15591592-15591702,
15591783-15592034,15592120-15594353,15594444-15594641
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>10_01_0112 -
1386762-1386953,1387228-1387309,1387399-1387509,
1387590-1387841,1387927-1388348,1388430-1390160,
1390251-1390448
Length = 995
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>09_02_0131 -
4693828-4694019,4694107-4694199,4694294-4694375,
4694465-4694575,4694656-4694907,4694993-4697196
Length = 977
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 463 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 522
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 523 PQPVQASPTSPTKQ 536
>08_02_0194 +
14084828-14085025,14085116-14085788,14085855-14087082,
14087435-14087686,14087767-14087877,14087967-14088048,
14088323-14088514
Length = 911
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 528 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 587
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 588 PQPVQASPTSPTKQ 601
>08_01_0440 +
3875422-3875619,3875710-3876382,3876449-3877943,
3878029-3878280,3878361-3878471,3878561-3878642,
3878917-3879108
Length = 1000
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 528 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 587
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 588 PQPVQASPTSPTKQ 601
>06_01_1169 +
9996068-9996265,9996356-9998589,9998675-9998926,
9999007-9999117,9999207-9999288,9999563-9999754
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>06_01_1155 +
9777611-9777808,9777899-9780132,9780218-9780469,
9780550-9780660,9780750-9780831,9781106-9781297
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>05_01_0577 +
5159934-5160131,5160222-5162455,5162541-5162792,
5162873-5162983,5163073-5163154,5163429-5163620
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>05_01_0571 -
5067558-5067749,5068024-5068105,5068195-5068305,
5068386-5068637,5068723-5070956,5071047-5071244
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>03_04_0168 + 17953848-17954585
Length = 245
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 832 QQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHI 704
QQG +AA A+ PP +SR +++ + MR P PAV +
Sbjct: 124 QQGASAARATRAPPPAPAASRVSSFSW-GRMRRPACYWPAVMV 165
>02_04_0029 +
19036176-19036481,19036602-19036733,19036814-19036933,
19037763-19037837,19038282-19038392,19038528-19038635,
19038865-19038933,19038934-19039004,19039095-19039147,
19039223-19039326,19039424-19039696
Length = 473
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/69 (33%), Positives = 31/69 (44%)
Frame = -1
Query: 841 ITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAA 662
I AAAAA + PP S SS P P+ QP +G + +ST AAA
Sbjct: 29 IPAPTSAAAAAADVPPPPSSSSSPPPP---PPSSVEGRTKQPGGGGRGADAASSTSAAAA 85
Query: 661 PLQEQKQML 635
Q+ K+ +
Sbjct: 86 VEQKGKKKI 94
>02_01_0374 -
2702804-2702995,2703270-2703351,2703441-2703551,
2703632-2703883,2703969-2704798,2704895-2706202,
2706293-2706490
Length = 990
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 518 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 577
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 578 PQPVQASPTSPTKQ 591
>01_06_0075 -
26201231-26201422,26201697-26201778,26201868-26201978,
26202059-26202310,26202396-26204629,26204720-26204917
Length = 1022
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>01_05_0224 +
19485296-19485493,19485584-19487817,19487903-19488154,
19488235-19488345,19488435-19488516,19488791-19488982
Length = 1022
Score = 29.1 bits (62), Expect = 4.9
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPL-T 683
L A T A AA+ PP + P + P +R+PP P P Q PL T
Sbjct: 550 LAAGSSTPSSSQAMTAAAPAPPSPPKPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPT 609
Query: 682 STMLAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 610 PQPVQASPTSPTKQ 623
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP-APQPAVHIQGQEPLTS 680
L A + ++AA+ PP + P + P +R+PP P P Q PL +
Sbjct: 458 LSAAVLAAGSSTPSSAAAPAPPSPPEPPSPRHPPSPPPLRSPPRQPTPPPSPSQQPPLPA 517
Query: 679 TM-LAAAPLQEQKQ 641
+ A+P KQ
Sbjct: 518 PQPVQASPTSPAKQ 531
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -1
Query: 748 PNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQ 608
P + P PQP VH Q Q+P L P Q+ L ++L P Q
Sbjct: 195 PQSQQTPQPQPQVHPQPQQP---PQLQPQPQLLQQPQLPQQLQPQSQ 238
>07_01_0008 - 56178-57095
Length = 305
Score = 28.3 bits (60), Expect = 8.5
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = -1
Query: 817 AAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEP-LTSTMLAAAPLQEQKQ 641
+ AAS+RP VS +S A + T + PA P S L P ++
Sbjct: 36 SGAASLRPTAVSMASPRARLQLTHPVALGPAFSTYFSFSLSGPGSLSFFLTPHPHPDRHP 95
Query: 640 MLGERLFPLIQRMHPDLAGKITG 572
L +F R+ DLAG TG
Sbjct: 96 FLLAIVFDAAARVRIDLAGHTTG 118
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 28.3 bits (60), Expect = 8.5
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 841 ITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAA 662
+ A + AS+R P V ++ PA+ P + PAP V + + PL + AA+
Sbjct: 13 VAAADDAAPSPASLRLPRVMSAASPAS----PTSPSTPAPARRVVVSHRLPLRAAADAAS 68
Query: 661 P 659
P
Sbjct: 69 P 69
>02_03_0251 + 16849905-16851308
Length = 467
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -1
Query: 727 APQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLI 611
AP PA H G L +T +A AP Q L +R PLI
Sbjct: 2 APPPAAHAAGLRVLRTTRVAPAPPAGQ-PALPKRALPLI 39
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,367,215
Number of Sequences: 37544
Number of extensions: 394611
Number of successful extensions: 1770
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1740
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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