Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc10p11
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 105 3e-23
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 105 3e-23
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 105 3e-23
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 105 3e-23
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 97 2e-20
Z68160-1|CAA92294.2| 489|Caenorhabditis elegans Hypothetical pr... 34 0.12
AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical ... 34 0.15
Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical pr... 33 0.20
AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical ... 33 0.27
Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical pr... 31 0.81
U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical pr... 31 0.81
U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydr... 30 1.9
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 30 2.5
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 3.3
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81146-10|CAB54274.2| 796|Caenorhabditis elegans Hypothetical p... 29 4.3
Z81146-9|CAB03528.1| 817|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81121-2|CAB54308.2| 796|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z81121-1|CAB03351.1| 817|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z70308-14|CAB54254.2| 796|Caenorhabditis elegans Hypothetical p... 29 4.3
Z70308-13|CAA94353.1| 817|Caenorhabditis elegans Hypothetical p... 29 4.3
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 29 4.3
AY090019-1|AAM09088.1| 796|Caenorhabditis elegans minibrain kin... 29 4.3
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 29 4.3
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 29 5.7
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 5.7
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 29 5.7
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 29 5.7
AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical ... 29 5.7
U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical pr... 28 7.6
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 105 bits (253), Expect = 3e-23
Identities = 60/112 (53%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Frame = -1
Query: 799 RPPLVSQSSRPA--NYKYTPNMRNPPAPQP-AVHIQGQEPLTSTMLAAAPLQEQKQMLGE 629
RPP Q RPA K P +P + I GQEPLTS MLAAA QEQKQ+LGE
Sbjct: 529 RPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGE 588
Query: 628 RLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 479
R++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 589 RIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 105 bits (253), Expect = 3e-23
Identities = 60/112 (53%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Frame = -1
Query: 799 RPPLVSQSSRPA--NYKYTPNMRNPPAPQP-AVHIQGQEPLTSTMLAAAPLQEQKQMLGE 629
RPP Q RPA K P +P + I GQEPLTS MLAAA QEQKQ+LGE
Sbjct: 469 RPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGE 528
Query: 628 RLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 479
R++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 529 RIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 580
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 105 bits (253), Expect = 3e-23
Identities = 60/112 (53%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Frame = -1
Query: 799 RPPLVSQSSRPA--NYKYTPNMRNPPAPQP-AVHIQGQEPLTSTMLAAAPLQEQKQMLGE 629
RPP Q RPA K P +P + I GQEPLTS MLAAA QEQKQ+LGE
Sbjct: 466 RPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGE 525
Query: 628 RLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 479
R++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 526 RIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 577
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 105 bits (253), Expect = 3e-23
Identities = 60/112 (53%), Positives = 76/112 (67%), Gaps = 5/112 (4%)
Frame = -1
Query: 799 RPPLVSQSSRPA--NYKYTPNMRNPPAPQP-AVHIQGQEPLTSTMLAAAPLQEQKQMLGE 629
RPP Q RPA K P +P + I GQEPLTS MLAAA QEQKQ+LGE
Sbjct: 529 RPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGE 588
Query: 628 RLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 479
R++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 589 RIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 96.7 bits (230), Expect = 2e-20
Identities = 60/132 (45%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVS--QSSRPANYKYTPNMR--NPPAPQPAVHIQGQEP 689
+G PI QQG A A +P + +P + P + Q + I GQE
Sbjct: 545 MGGAPIR-QQGPAPRGAPQKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQSGIVIHGQET 603
Query: 688 LTSTMLAAAPLQEQKQMLGERLFPLIQRMHPD--LAGKITGMLLEIDNSELLHMLEHAES 515
LTS MLA A QEQKQ+LGER++ LI++M P+ AGKITGM+LEIDN+EL+ ML+ AE
Sbjct: 604 LTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAEL 663
Query: 514 LKAKVDEAVAVL 479
++KV+EA VL
Sbjct: 664 FRSKVEEAFGVL 675
>Z68160-1|CAA92294.2| 489|Caenorhabditis elegans Hypothetical
protein D1046.1 protein.
Length = 489
Score = 34.3 bits (75), Expect = 0.12
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Frame = -1
Query: 871 TIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPN---MRNPPAPQPAVHIQ 701
TIR G + TG+ G + + S PPL+ Q RP P APQ + I
Sbjct: 199 TIRIGAGGQ--TGRTGTSVSGRSGPPPLMMQQVRPTPLMSQPTSLPSNLNQAPQMRLQIN 256
Query: 700 GQE-PLTS-------TMLAAAPL--------QEQKQMLGERLFPLIQ 608
GQ+ PL + TML PL Q+ + M+G+++ P++Q
Sbjct: 257 GQQVPLMNRAPVPQQTMLGNGPLGGMNQQIQQQPQMMMGQQVRPMMQ 303
>AC025722-7|AAK68510.1| 540|Caenorhabditis elegans Hypothetical
protein Y50D4C.5 protein.
Length = 540
Score = 33.9 bits (74), Expect = 0.15
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Frame = -1
Query: 874 STIRTSLGARPITGQQGVAAAAASIRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQ 701
ST T + P+ + AAA S++ + QSS + TP PA Q +Q
Sbjct: 341 STASTPTPSTPLPTRPAAAAAQKSVKQEVYEQSSSSNCPSISSTPRSSEDPANQQQQQLQ 400
Query: 700 GQ--------EPLTSTMLAAAPLQEQKQMLGERLFPLIQRM 602
GQ E L + + + +++Q+ L ER PL++++
Sbjct: 401 GQNVVFGAHPEHLNNLWMVSKEIRDQQLQL-ERSIPLLEKL 440
>Z75540-4|CAA99849.1| 169|Caenorhabditis elegans Hypothetical
protein F37D6.3 protein.
Length = 169
Score = 33.5 bits (73), Expect = 0.20
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 748 PNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLF 620
PN P H+ Q P MLAAA QEQ +LG+R++
Sbjct: 83 PNFEYNRYPVQNQHMMAQGPGVYPMLAAAAPQEQNHLLGDRIY 125
>AF067948-7|AAC17699.1| 643|Caenorhabditis elegans Hypothetical
protein T27C4.2 protein.
Length = 643
Score = 33.1 bits (72), Expect = 0.27
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = -1
Query: 757 KYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKI 578
K + PP P V + EP T+T L PL+ +++LGE + ++ + D+ +
Sbjct: 243 KVQKSSTEPPQPTTTVPQEAAEPTTTTTLQ--PLESTRRILGEEIEKSVENLEKDIEESV 300
Query: 577 TGMLLEIDNSELLHMLEHAE-SLKAKVDEAVAVL 479
E N + +E + L+ +++EA L
Sbjct: 301 KNG-SEKMNDKTAQAVEQIDLELEKRLEEAAKQL 333
>Z81529-4|CAB04295.1| 272|Caenorhabditis elegans Hypothetical
protein F35E8.6 protein.
Length = 272
Score = 31.5 bits (68), Expect = 0.81
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 579 IFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGSCPWICTAGCG 725
++P G + + G++ P IC+ + + A A + +++ IC CG
Sbjct: 56 LYPVGGGGAIVVGGDNARPFICYRTGNAAGAVMDDIKADAISICPKSCG 104
>U46675-1|AAB52645.2| 524|Caenorhabditis elegans Hypothetical
protein F35A5.4 protein.
Length = 524
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = +3
Query: 516 DSACSNI*RSSELSISKSIPVIFPAKSGCIL*ISGNSRSPSICFCSWSGAAASIVEVRGS 695
DSAC N+ RS + +P+ PA CI I G + C S S + I +V S
Sbjct: 94 DSACINLVRSGPSCDQQCMPLCLPA---CINAIQGPTECAPQCMPSCS--SNCIQQVFPS 148
Query: 696 CPWICTAGC 722
CP C C
Sbjct: 149 CPQQCQPVC 157
>U39743-2|AAA80437.6| 310|Caenorhabditis elegans Carbonic anhydrase
protein 5 protein.
Length = 310
Score = 30.3 bits (65), Expect = 1.9
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -2
Query: 774 VAQPI-INIHQTCATHQLHNQQCISKDKNL*PL 679
+A+P+ I+ HQ QLHN++ + DKN PL
Sbjct: 236 LAEPMAISSHQLHLLRQLHNKELVKSDKNYRPL 268
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 731 TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGT-TVSTYSENAP 597
T+S+T+S T T+ + S++TP T T T T S+ S +AP
Sbjct: 521 TTSSTTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAP 566
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 749 TKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 615
T A+PTS+ TS+ P + TS L +STT T T T
Sbjct: 235 TTTAEPTSTITSTTVPESSTSLLTSTLASTTTLIPTSTMSTITLT 279
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 833 TARSCCCCCIYSSTFSISKQSPSQL*IY--TKHAQPTSSTTSSAYPRTRTSDLYYACSST 660
T+ +C S+T +++ P+ T PT++TT+ T T+ ++T
Sbjct: 241 TSYTCASTTTVSTTSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTPTTTTTT--PTTTT 298
Query: 659 TPGTETDAWGTTVSTYSENAP 597
T T T+ TT T + AP
Sbjct: 299 TESTTTETTSTTTPTTTTTAP 319
>Z81146-10|CAB54274.2| 796|Caenorhabditis elegans Hypothetical
protein F49E11.1c protein.
Length = 796
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>Z81146-9|CAB03528.1| 817|Caenorhabditis elegans Hypothetical
protein F49E11.1b protein.
Length = 817
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>Z81121-2|CAB54308.2| 796|Caenorhabditis elegans Hypothetical
protein F49E11.1c protein.
Length = 796
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>Z81121-1|CAB03351.1| 817|Caenorhabditis elegans Hypothetical
protein F49E11.1b protein.
Length = 817
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>Z70308-14|CAB54254.2| 796|Caenorhabditis elegans Hypothetical
protein F49E11.1c protein.
Length = 796
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>Z70308-13|CAA94353.1| 817|Caenorhabditis elegans Hypothetical
protein F49E11.1b protein.
Length = 817
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -1
Query: 856 LGARPITGQQGVAAAAASIRPPLVSQSSRPANY-KYTPNMRNPPAPQPAVHIQG 698
LG IT Q V A A P ++ PA K T R PPAP+P I G
Sbjct: 266 LGRTRITEQNPVKEAQAKESTPELADLPLPAGRRKSTAAPRAPPAPKPIPVING 319
>AY090019-1|AAM09088.1| 796|Caenorhabditis elegans minibrain kinase
2 protein.
Length = 796
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 802 IRPPLVSQSSRP--ANYKYTPNMRNPPAPQPAVHIQGQEPLTSTMLAAAPLQEQKQML 635
I PP+++ S+ P NY T + N P+ Q Q L + APLQ+ L
Sbjct: 161 ISPPVINSSANPHLVNYVQTSSFDNGSYEFPSGQAQQQRRLGGSQQHLAPLQQTASSL 218
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -1
Query: 850 ARPITGQQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPPAP 722
A P G QG AAA A+ PP + ++ P P PPAP
Sbjct: 353 AAPAGGYQGGAAAGAAAPPPAPAAAAAPEPAP-APAAAPPPAP 394
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 832 QQGVAAAAASIRPPLVSQSSRPANYKYTPNMRNPP--APQPAVHIQGQEPLTSTMLAAAP 659
QQ ++ A+ PP +PA + P +NPP P PA Q +P+T +A P
Sbjct: 387 QQAPSSQQATQAPP------KPAPQQAPPVQQNPPKPTPSPAPPAQKAQPVTQQQASAPP 440
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -3
Query: 749 TKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVSTYS 609
T TS+TTS T TS S++TP T T TT ST S
Sbjct: 277 TSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTTTTTMQTTTPSTTS 323
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 731 TSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 615
T+STT++ P T T+ +STT T T TT ST
Sbjct: 70 TTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTST 108
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 749 TKHAQPTSSTTSSAYPRTRTSDLYYACSSTTPGTETDAWGTTVST 615
T A+ T+S+ P + + A STTPGT T W T +T
Sbjct: 556 TSDAEGCKKTSSTPTPSSTSVHSTTATPSTTPGTTTYNWPTGGTT 600
>AL031269-2|CAA20332.1| 299|Caenorhabditis elegans Hypothetical
protein VW02B12L.3 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 868 IRTSLGARPITGQ-QGVAAAAASIRPPLVSQSSRPANYKYTPNMRNP--PAPQPAVHIQG 698
++ S G+RP+ + VAAA RP + ++ P +RN PAP + +
Sbjct: 139 LKGSTGSRPVAAPARPVAAAPPKPRPAAPAVAAPAVKASVPPTVRNGTRPAPATSAGTRR 198
Query: 697 QEPLTSTMLAAAPLQEQK 644
+P S L +++ K
Sbjct: 199 ADPSASEELLKQEIEKHK 216
>U46674-4|AAA85756.1| 574|Caenorhabditis elegans Hypothetical
protein T26A8.4 protein.
Length = 574
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 805 SIRPPLVSQSSRPANYKYTPNMRNPPAPQPAVHIQGQEP 689
+I PP +S + P ++ P + P P P H Q+P
Sbjct: 380 TIEPPRLSTQTPPIMHQQQPQLMRPMHPVPIQHPHLQQP 418
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,939
Number of Sequences: 27780
Number of extensions: 348751
Number of successful extensions: 1512
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -