Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p10
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                          193   1e-49
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   190   9e-49
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    31   1.1  
11_01_0205 + 1617044-1617197,1617845-1618233                           30   2.6  
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216     30   2.6  
09_02_0570 + 10786779-10787144,10787353-10787547,10787647-107878...    29   3.4  
03_02_0286 + 7100342-7100504,7100613-7100719,7102109-7102240,710...    29   4.5  
02_04_0073 - 19471254-19472681                                         29   4.5  
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456...    29   5.9  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  193 bits (471), Expect = 1e-49
 Identities = 97/210 (46%), Positives = 139/210 (66%), Gaps = 2/210 (0%)
 Frame = -3

Query: 824 VVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 645
           V++D  + I KT QA+  L+++ A++D  K   S  +R GKGKMRNRR I RKGPLI++ 
Sbjct: 157 VISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYG 216

Query: 644 KDQG-LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 468
            +   + +AFRN+PGV+           LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS
Sbjct: 217 TEGSKIVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPS 276

Query: 467 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 288
            +KK F LP+PKMAN DL R++ SDE++ V++  NK V R  ++ NPL N  A+LKLNPY
Sbjct: 277 LKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPY 336

Query: 287 AAVLKRKAIL-ELRRRKNLKALADAEKSGL 201
               ++ A L E  R K  K   D++++ L
Sbjct: 337 FGTARKMATLAEAARIKARKEKLDSKRTKL 366


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  190 bits (464), Expect = 9e-49
 Identities = 99/223 (44%), Positives = 141/223 (63%), Gaps = 2/223 (0%)
 Frame = -3

Query: 824 VVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFN 645
           VV+D ++ I KT Q++  L+++ A++D  K   S  +RAGKGKMRNRR I RKGPLI++ 
Sbjct: 156 VVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKGPLIVYG 215

Query: 644 KDQG-LTRAFRNIPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPS 468
            +   + +AFRN+PGV+           LAPGGHLGRFVIWT+ AF +LD ++G + TP+
Sbjct: 216 TEGSKVVKAFRNLPGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPA 275

Query: 467 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 288
            +KK F LP+PKMAN DL+RL+ SDE++ V++  NK V     + NPL N  A+LKLNPY
Sbjct: 276 LKKKGFVLPRPKMANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPY 335

Query: 287 AAVLKRKAIL-ELRRRKNLKALADAEKSGLKLSKRNPAMKAEK 162
               ++ A L E  R K      D++++ L   + +    A K
Sbjct: 336 FGTARKMAALAEAARVKARTEKLDSKRTKLSPEESSKIKAAGK 378


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -1

Query: 574 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 401
           +S S+LR + LD+SSS  +P S+       H  HH+   +     S    WP       S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435

Query: 400 SLMRSGRSSVLPTNA 356
            ++ SG    LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450


>11_01_0205 + 1617044-1617197,1617845-1618233
          Length = 180

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 294 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 383
           ++  HRLV G+  +F    +H FV S ++L
Sbjct: 35  LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64


>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
          Length = 1030

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -3

Query: 560 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 420
           APG  G  GR+V+   SA   LDP F SW   S++ K F++ +   A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717


>09_02_0570 +
           10786779-10787144,10787353-10787547,10787647-10787826,
           10787925-10788119,10789629-10789727,10789822-10790328,
           10790438-10790779
          Length = 627

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
 Frame = -3

Query: 479 KTPSKQKKNFNLPQPKMANTDLTR---LLKSDEIRKVLRAPNKRVIRATR-KLNPLTNNK 312
           K P+KQ K    PQ +++  D +R   + K  + +  L A +     + + K  P   + 
Sbjct: 409 KMPAKQAKEAPAPQAEVSPKDESRVKAIAKPSKAKSSLDADDDYEAESPKEKPKPKEVDV 468

Query: 311 AMLKLNPYAAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 144
           A LK       +++   L L R+K L     A+ +     +    +K E++R RRR
Sbjct: 469 AKLKEIKRQEEMEKNR-LALERKKKLAEKQAAKAAARAQKEAEKKLKREEMRARRR 523


>03_02_0286 +
           7100342-7100504,7100613-7100719,7102109-7102240,
           7102383-7102539,7103099-7103220
          Length = 226

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/89 (25%), Positives = 38/89 (42%)
 Frame = +3

Query: 510 ECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEGASQTLILVEDYEGPLTLDTTTV 689
           E G  PD + + +T R +++         + +G+V E   +    + D   P  LDT   
Sbjct: 50  ESGTQPDIDLATITDRMEVKRA-------VQSGNVQEAIEK----INDLN-PTILDTNPQ 97

Query: 690 AHFTLTSTKTLRLVHLKDIRPCLEAPQED 776
            +F L   K + L+    I   LE  QE+
Sbjct: 98  LYFHLQQQKLIELIRAGKINEALEFAQEE 126


>02_04_0073 - 19471254-19472681
          Length = 475

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 520 SPHSAGLTPYSGHGRHHRNKR 458
           +P   G +P S HG HHR+++
Sbjct: 20  APRPRGASPLSSHGHHHRSRK 40


>01_01_0612 +
           4565422-4565481,4565597-4565671,4565760-4566332,
           4566438-4566551,4566676-4567377
          Length = 507

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 495 GVKPAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVA 617
           G+  A  G++ DD+  K  SR  L  + ++N+    +GD A
Sbjct: 147 GLSCARGGVASDDDDDKQASRRALPPMPVLNLSSDSSGDAA 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,049,270
Number of Sequences: 37544
Number of extensions: 415583
Number of successful extensions: 1146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)