Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc10p09
         (195 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    77   2e-16
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    76   6e-16
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    76   7e-16

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 77.4 bits (182), Expect = 2e-16
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV  I+ Q  IKVDGKVRT  T+  G  D +S+EK    F ++YD+KG
Sbjct: 48  LRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKG 107

Query: 14  RFTI 3
           RFT+
Sbjct: 108 RFTV 111


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 76.2 bits (179), Expect = 6e-16
 Identities = 34/64 (53%), Positives = 43/64 (67%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV  I+ Q  IKVDGKVRT  T+  G  D +S++K    F ++YD+KG
Sbjct: 48  LRNRLKYALNGREVKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKG 107

Query: 14  RFTI 3
           RFT+
Sbjct: 108 RFTV 111


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 75.8 bits (178), Expect = 7e-16
 Identities = 34/64 (53%), Positives = 43/64 (67%)
 Frame = -2

Query: 194 LRNRXKYAXTGNEVXKIVKQXXIKVDGKVRTXLTYRXGXXDXVSIEKXNXXFXIIYDVKG 15
           LRNR KYA  G EV  I+ Q  I+VDGKVRT  T+  G  D +S+EK    F ++YD+KG
Sbjct: 48  LRNRLKYALNGREVKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKG 107

Query: 14  RFTI 3
           RFT+
Sbjct: 108 RFTV 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,169
Number of Sequences: 5004
Number of extensions: 2911
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)